Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02297 ATGGATCGCAAGAGGGGAAGGCCTGAAGCTGCCTTCAATTTCAATGGCGGCGCCAAGAAATCGAGGCCTGAAACGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCCGGCTGTCCATTTGGTGAAGGATGCCACTTCCTGCATTATGTTCCTGGTGGCTTTAAAGCTGTCTCTCAACTGATCAATGTTGGTAGCAATCCTGTTACTCCTCAAGTTGGGAGAAACCCTGTTCCACCATCCTTCCCCGATGGATCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACAGCTGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACAGCCCCATCATATGAAGATCCCCGTGTTTTGGGACAAATGCCAAGCAGCAGGGTAGGTGGGCGAGTTGAGCCCCCACATCCAGCTCATGGAGCTGCTGCCAGCTTTGGAGCCTCGGCTACTGCAAAAATCAGTATCAATGCTTCCTTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCGAAGCAAATATGTCGTGTAACAGGAGCTAAACTTTCCATAAGGGATCATGACACGGATCCTAACCTTAGAAACATCGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCACGAAGTTATTCTAAATGTTAGTTCTGCCTCTGGGCCTCCAATGAAAAGCTTTACTTCGCAGACTTCTGCCCCTACAAGCAACTTCAAGACTAAGCTGTGCGAAAACTTTGCCAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCACATGGAACTGATGAATTGCGCAAGTCTGGAATGTGA 894 0.4776 MDRKRGRPEAAFNFNGGAKKSRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVTPQVGRNPVPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVLGQMPSSRVGGRVEPPHPAHGAAASFGASATAKISINASLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEVILNVSSASGPPMKSFTSQTSAPTSNFKTKLCENFAKGSCTFGERCHFAHGTDELRKSGM 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02297 297 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Gma20g02297 297 Pfam KH domain 174 236 IPR004088 GO:0003723
Gma20g02297 297 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Gma20g02297 297 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Gma20g02297 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Gma20g02297 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Gma20g02297 297 Gene3D - 94 131 - -
Gma20g02297 297 Gene3D - 260 295 - -
Gma20g02297 297 Gene3D K Homology domain, type 1 167 259 IPR036612 GO:0003723
Gma20g02297 297 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 296 - -
Gma20g02297 297 MobiDBLite consensus disorder prediction 1 33 - -
Gma20g02297 297 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Gma20g02297 297 ProSiteProfiles Type-1 KH domain profile. 171 235 - -
Gma20g02297 297 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 296 - -
Gma20g02297 297 SMART kh_6 170 240 IPR004087 GO:0003676
Gma20g02297 297 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Gma20g02297 297 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Gma20g02297 297 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Gma20g02297 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 241 IPR036612 GO:0003723
Gma20g02297 297 CDD KH-I 175 236 - -
Gma20g02297 297 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Gma20g02297 297 SUPERFAMILY CCCH zinc finger 262 293 IPR036855 GO:0046872
Gma20g02297 297 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02297 Gma-Chr20 50070102 50075549 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma20g02297 KH_1 6.9e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02297 - - gmx:100818781 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02776 10 54860309 54864721 Gma20g02297 20 50070102 50075549 GST