Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02295 ATGATTCAAACATACAAGGAAAGTTCAGATTGTAGCGAAATCAAATTTGCATTCGACGCAGTAGTAAAACGCGCGAGGCATGAAGAGAATAATGCAGCAGCACAGAAGTTCAAAGGCGTTGTGTCTCAACAAAATGGGAACTGGGGTGCACAGATATATGCACACCAGCAGAGAATCTGGTTGGGGACCTTCAAATCTGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTTAGAAGCGGAGAGTGCCACAGAAACTTTCCATGGAACGACCAAACAGTTCAAGAGCCTCAGTTCCAAAGCCATTACAGCGCAGAAACAGTGCTAAACATGATTAGAGATGGCACCTATCCATCAAAATTTGCTACATTTCTCAAAACTCGTCAAACCCAAAAAGGCGTTGCGAAACACATAGGTCTGAAGGGTGATGACGAGGAACAGTTTTGTTGCACCCAACTTTTTCAGAAGGAATTAACACCAAGTGATGTGGGCAAGCTCAACAGGCTTGTCATCCCAAAGAAGCATGCAGTTAGCTATTTTCCTTACGTTGGTGGCAGTGCTGATGAGAGTGGTAGTGTTGACGTGGAGGCTGTGTTTTATGACAAACTCATGCGATTGTGGAAGTTCCGATACTGCTATTGGAAGAGCAGCCAAAGTTACGTGTTCACCAGAGGCTGGAATCGGTTTGTGAAGGATAAGAAGTTAAAGGCTAAAGATGTCATTGCGTTTTTTACGTGGGGAAAAAGTGGAGGAGAGGGAGAAACTTTTGCATTGATCGATGTAATTTATAATAATAATGCAGAAGAAGACAGCAAGGGAGACACCAAACAAGTTTTGGGAAACCAATTACAATTAGCTGGCAGTGAAGAAGGTGAAGATGAAGATGGAAACATTGGAAAGGATTTCAATGCACAAAAGGGTCTGAGGCTCTTTGGTGTGTGTATCACCTGA 960 0.4333 MIQTYKESSDCSEIKFAFDAVVKRARHEENNAAAQKFKGVVSQQNGNWGAQIYAHQQRIWLGTFKSEREAAMAYDSASIKLRSGECHRNFPWNDQTVQEPQFQSHYSAETVLNMIRDGTYPSKFATFLKTRQTQKGVAKHIGLKGDDEEQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVSYFPYVGGSADESGSVDVEAVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFFTWGKSGGEGETFALIDVIYNNNAEEDSKGDTKQVLGNQLQLAGSEEGEDEDGNIGKDFNAQKGLRLFGVCIT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02295 319 Gene3D - 153 275 IPR015300 -
Gma20g02295 319 ProSiteProfiles B3 DNA-binding domain profile. 157 268 IPR003340 GO:0003677
Gma20g02295 319 Pfam B3 DNA binding domain 157 247 IPR003340 GO:0003677
Gma20g02295 319 Gene3D AP2/ERF domain 35 92 IPR036955 GO:0003700|GO:0006355
Gma20g02295 319 SMART B3_2 157 265 IPR003340 GO:0003677
Gma20g02295 319 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 5 287 - -
Gma20g02295 319 SMART rav1_2 36 97 IPR001471 GO:0003700|GO:0006355
Gma20g02295 319 ProSiteProfiles AP2/ERF domain profile. 36 91 IPR001471 GO:0003700|GO:0006355
Gma20g02295 319 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Gma20g02295 319 CDD B3_DNA 156 255 IPR003340 GO:0003677
Gma20g02295 319 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 287 IPR044800 GO:0003700
Gma20g02295 319 SUPERFAMILY DNA-binding pseudobarrel domain 155 252 IPR015300 -
Gma20g02295 319 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Gma20g02295 319 Pfam AP2 domain 36 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02295 Gma-Chr20 50048046 50049005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02295 36 318 RAV Transcription Factor Family AT1G50680 53.526 3.07e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Gma20g02295 B3 1.5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02295 K09287 - gmx:102660503 642.499