Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02270 ATGGACGACTACACGAGGGAAATGATGGACCTGAAGACACTGGTCACTCGCACTCTCGAGAAGAAAGGCGTCCTTGCCAGGATCCGTGCCGAACTCAGAGCGAGTGTGTTCGAGGCCATCGAAGAGGAAGATCATGTGATTGAGAAGGAACAAGCCCTACCTCCTGCATTGCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTGGAGAAAGATTTTTGGAAGACAGAGCTTAAGGAGTTTAGTGCCAAAAATGGATATGATCTCAACAGAAACAGAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGGTGCATAGCTGACATTATTTCTCTACAACATTCAGATAGAAGAGGAGGATCCTCCATGTCTGCTTATAGGAAGGATGATTACAATTGGCGATATGACAGGGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGAATTATCAAAAAATACCAAATTTCCCTACATATCTATCTAAGTTGTGTGTGAGAGACTATGTAAGGGATGGAAGACATGCGAATGGTGAATTCTCAATGGCAGTTATTCAGGCAAACAATTTGTTAGAGGATCAAAGCCAACTTGAATCCGGCCCCTTGAGCTTAACTGAGGGAAATCCTCAAGGAACTTTTGTTGGTATATATGATGGGCATGGAGGTCCAGAAGCTGCCCGGTTTGTCAATGACCGTTTATTCAATAACATCAAGAAGTTTACTTCAGAAAATAATGGAATGTCAGCTGATGTTATCAATAAAGCATTCTTGGCAACTGAAGAAGAATTTCTTTCTTTGGTAGAGAAGCTGTGGCTGCACAAGCCGCCGATAGCATCAGTTGGTTCTTGCTGTTTGATAGGCATAATATGTAGTGGGGAGCTCTATATTGCAAATGCAGGAGATTCTCGAGCAGTATTAGGTAGACTGGATGAGGCTATGAAAGAGATTAAAGCTATTCAACTATCCGTGGAGCACAATGCTAGCCATGCATCTGTCAGAGAAGAGTTGCACTCATTGCATCCTAATGATCCTCAGATTGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAGATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAAGCACCATTATTAGCAAAATTTCGACTCTCAGAACCCTTTGATCAGCCAATCCTTAAAGCTGAACCAGCTATACTAGTACAGAAACTGTGTCCTCAAGATCAGTTTCTTATACTTGCATCAGATGGGTTATGGGAGCAAATGAGCAATCAAGAAGCAGTTGACATTGTCCAGAGCTGTCCACGTAATGGAGCCGCGAAGAAACTTGTGAAAACTGCACTTTGTGAAGCTGCAAAGAAAAGAGAAATGAGATACTCAGACTTGAGAAAGATTGACCGAGGGGTGAGGAGACATTTCCATGATGACATCACGGTTATAGTTTTGTATCTTGATTCAAATTTTTTGTCTCATGCCAATTCACGTGTACCCTTGGTTTCGATCAAAGGAGGTGGTGATAGTGGTTATGGTATTGGTATTATAGATGCCTAG 1914 0.4331 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDHVIEKEQALPPALLGSCNDRAKQLHASPPGRLLSAMICEYLDWAQLSHTLKVYLPECNLEKDFWKTELKEFSAKNGYDLNRNRDSPLLLDVLEGFLKLENLSQARASGRRFTTSEADPLPNSESRNPRRHSSSSVAGGLPPLGRCIADIISLQHSDRRGGSSMSAYRKDDYNWRYDRDELPEDIIQASSALENLQLDRKARNLTSSWRHAGDGINEDDGRDHVNYQKIPNFPTYLSKLCVRDYVRDGRHANGEFSMAVIQANNLLEDQSQLESGPLSLTEGNPQGTFVGIYDGHGGPEAARFVNDRLFNNIKKFTSENNGMSADVINKAFLATEEEFLSLVEKLWLHKPPIASVGSCCLIGIICSGELYIANAGDSRAVLGRLDEAMKEIKAIQLSVEHNASHASVREELHSLHPNDPQIVVMKHQVWRVKGLIQISRSIGDAYLKKAEFNKAPLLAKFRLSEPFDQPILKAEPAILVQKLCPQDQFLILASDGLWEQMSNQEAVDIVQSCPRNGAAKKLVKTALCEAAKKREMRYSDLRKIDRGVRRHFHDDITVIVLYLDSNFLSHANSRVPLVSIKGGGDSGYGIGIIDA 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02270 637 ProSitePatterns PPM-type phosphatase domain signature. 331 339 IPR000222 GO:0043169
Gma20g02270 637 PANTHER ALPHABET, ISOFORM E-RELATED 289 627 - -
Gma20g02270 637 SUPERFAMILY PP2C-like 322 606 IPR036457 -
Gma20g02270 637 ProSiteProfiles PPM-type phosphatase domain profile. 297 605 IPR001932 -
Gma20g02270 637 CDD PP2Cc 298 605 IPR001932 -
Gma20g02270 637 MobiDBLite consensus disorder prediction 151 177 - -
Gma20g02270 637 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Gma20g02270 637 Gene3D - 59 138 - -
Gma20g02270 637 Pfam Protein phosphatase 2C 319 576 IPR001932 -
Gma20g02270 637 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 289 627 - -
Gma20g02270 637 Pfam LisH 78 103 IPR006594 GO:0005515
Gma20g02270 637 Gene3D - 280 616 IPR036457 -
Gma20g02270 637 MobiDBLite consensus disorder prediction 151 183 - -
Gma20g02270 637 SMART PP2C_4 289 603 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02270 Gma-Chr20 49777446 49786204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02270 287 627 PP2C-type Phosphatase Gene Family AT3G12620 75.660 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02270 K01102 - gmx:100807559 659.062