Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02267 ATGGCGTCAACATCTTGCGTTGGTAACACTTCATTATCTATGAAAGATTCAGCTTCGAGCTATTCTGCATATCCTCTTCCTCTAGCAAAATATGAGGAGGTTGTGGACAATCCCCAGCTCTTCATGTTTACCTTGGAGAAACTTCACGCTGCTATGGGTACCAAGTTCATGATTCCCATTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGAGTTCTCGAGGAGGGATTGCGAAGATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTTAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGTTTCATTGCTCTACCATTATGAACAAATCTACTTCTTTAAAGCTCGTGAATGGGATCCTATTGCTCCTGATGTTTCGCAGAACCAATCGACCCTGCCAGTTCCTCCTCCAAAAATGCAGTTTCAGCAGCCTTTGTCAGAAACTCAACCAGCTGTCTTTCAACTGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAGCATCTTCGGCAGGTTCTCCAGTCATTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATTGGTTCGGAAAAACTCAAAGGTGTGCTTTATCAAGCTCCACAAAACCCTGTATTGACAGCATCCCATCATAGTGCCTCAGCTAATAACAACAATGCTTCTGCTTCATTGGGTGTCCATCGTCGACGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGGTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAGCTACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCCATGAAGGATAAAGAGAGGTACAGAGTAGAAATGGAGGATTATCGGGAGAAACTGAAGATGGGCCCAGTTATCAGTGATGCTGTGCCGCTTCAACAACGACTTCCTGAACCAGATACTGACATGTTGGATGAAGCTGAGGGAGATTCTCCTCAAACTCCAGAGGAGAGCAGCTCTGGTGGAAGTGATTATGAAGATTATAATAAAACTGCAGAGAGAGGTTTTGATATGGATGCATTGCCTGTTATAGGAATGGGCGCAGAAACAAGTTATTTGGGTTCAGAAGAGAAGTTATCTAAGGGGGGGTTATGA 1260 0.4262 MASTSCVGNTSLSMKDSASSYSAYPLPLAKYEEVVDNPQLFMFTLEKLHAAMGTKFMIPIVGGRELDLHRLFVEVSSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYVSLLYHYEQIYFFKAREWDPIAPDVSQNQSTLPVPPPKMQFQQPLSETQPAVFQLSNVNAAKLPEAMAASSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLTASHHSASANNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRVEMEDYREKLKMGPVISDAVPLQQRLPEPDTDMLDEAEGDSPQTPEESSSGGSDYEDYNKTAERGFDMDALPVIGMGAETSYLGSEEKLSKGGL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02267 419 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Gma20g02267 419 Gene3D High mobility group box domain 249 339 IPR036910 -
Gma20g02267 419 MobiDBLite consensus disorder prediction 229 272 - -
Gma20g02267 419 MobiDBLite consensus disorder prediction 345 395 - -
Gma20g02267 419 SMART ARID_2 32 122 - -
Gma20g02267 419 Coils Coil 314 334 - -
Gma20g02267 419 SMART hmgende2 264 333 IPR009071 -
Gma20g02267 419 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Gma20g02267 419 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 395 - -
Gma20g02267 419 MobiDBLite consensus disorder prediction 229 244 - -
Gma20g02267 419 SMART bright_3 36 127 IPR001606 GO:0003677
Gma20g02267 419 Gene3D - 28 138 IPR036431 GO:0003677
Gma20g02267 419 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Gma20g02267 419 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Gma20g02267 419 CDD HMGB-UBF_HMG-box 265 329 - -
Gma20g02267 419 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 395 - -
Gma20g02267 419 PRINTS High mobility group (HMG1/HMG2) protein signature 297 316 - -
Gma20g02267 419 PRINTS High mobility group (HMG1/HMG2) protein signature 316 336 - -
Gma20g02267 419 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Gma20g02267 419 SUPERFAMILY HMG-box 253 336 IPR036910 -
Gma20g02267 419 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Gma20g02267 419 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02267 Gma-Chr20 49752102 49755647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02267 1 367 ARID Transcription Factor Family AT1G04880 60.733 1.20e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma20g02267 ARID 5.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02267 - - gmx:100807028 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02748 10 54648021 54651969 Gma20g02267 20 49752102 49755647 GST