Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02211 ATGGGTCTcggtaacgatgaagaagaggacaataacaacaacaataataataataagaataacaatgataaggttgtggatgacggagatGCTGGAGGAGGAAAGTCTTTCGGTTCAGTGTCGTGTTCCATTTGCCTCGAGGTTGTTGCCGATAATGGGGATAGATCCTGGTCCAAGCTTCAATGCGGTCATCAATTTCATCTCGATTGCATTGGTTCGGCATTCAACATAAAAGGAGCAATGCAGTGCCCTAATTGTCGGAAGATTGAGAAAGGTCAATGGCTATATGCTAATGGTTGTCGGTCATATCCTGAATTTAGCATGGATGAGTGGACTCACGATGAGGACCTTTATGATCTTAGCTACTCTGAGATGTCCTTTGGAGTTCATTGGTGCCCTTTTGGCAACCTGGCACGACTTCCATCATCCTTTGAGGAAGGGGAGTTTTCGTCATCTGCATATCATGATGTATTGGGACAACATGCTATATTTGCTGAACATACAGCTGTCTCATCTGCCAGTCATCCTTGCCCGTATATTGCTTACTTTGGACCAATACATCCATCCTCCTCGAATTCGGGTGGAACTGTATCAGAAGCTTCAAACTTCAACCATTGGAATGGTTCATCTGTGCCCAGTGACATGCCAACTTCCTACACATTTCCTGCTGTGGATCTTCATTATCACAGTTGGGAACACCACTCCCCTCCTTTCTCTACAGCAAGTAGTCGTCTAGTTGCTGCTGATCAGCCATCAGTATCCCCTGGTAGTCAAAGGCCAGCCAGGGGTGGTTCGGATGTACCAAGATCAGGATCTTTTATGCATCCCTTCCTTGTTGGTCACAGttCTGCTGCCAGAGTGGGGAGCTCGGTTGCTTCCTCAATGATCCCTCCTTATCCTGGTAGCAATGCTCGGACCCGTGATAGAGTCCAGGCTCTTCAGGCGTACTATCAACCACAGCAACCTCCTAATTCAACCACAATGCGGACACCTATTGCTTCTGGCACCCGAAGATCCAGTAGTCATAATGGATCTCCTCAATTAGCCCCAATAACCACATCGTCAGACCAAAGTGGTGGCTTCTTTCTTATCCCATCAAGTTCATCAGGACACAATTTTCAAGAAGAAAATCATCATCTACCAAATCACTTCCATGCTTGGGAAAGAGACCACTTGCCTTCGTTGTCATTGAGCCATGTCGATAGAGATTCAGGTTGGAGAGCGTACCACCAGGCCACCAGCCGGTCAGACCCAGCTTCCATTATCTTCTCATCTCAATCAGGGGGGAAAATGAGCGGGCGGTCAAGCCGCACAATTTATGTTGGCAATCTTCCTGGCGACGTTCGCTTGAGAGAAGTAGAGGATCTATTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAGATACCTCCGAGACCACCAGGCTATGCTTTTGTAGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCAATATCGAGATGGTTACAATTTTGATGGTTTTCGGTTACGAGTTGAACTTGCACATGGTGGACGGGGATATTCATCATCAGTAGACCGTTACAGTAGCTATAGCGGTGGCAGTGGTAGCCGTGGAGTTTCCAGGCGTTCTGACTACCGTGTTCTGGTCACTGGATTACCTCCGTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCGCAAGTCTTCCGTGAGCGTGGGGGTATGACTGGGATAGTTGATTATACCAATTATGATGATATGAAATATGCTATCAGGAAACTTGATGACTCAGAATTCCGCAATGCCTTTTCTCGTGCTTTCATACGGGTGAGGGAATATGATCGAGCCATAGCCGCAGCAGAAGTCATAGCTATAGTGACAGGAGCAGAAGTTGGTCTCCAAAACCAAAACACTCTCGACGTTCAATATCTCTTTCAAGAAAGGTGGAGGGGACAATGTTGA 1974 0.4478 MGLGNDEEEDNNNNNNNNKNNNDKVVDDGDAGGGKSFGSVSCSICLEVVADNGDRSWSKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSYPEFSMDEWTHDEDLYDLSYSEMSFGVHWCPFGNLARLPSSFEEGEFSSSAYHDVLGQHAIFAEHTAVSSASHPCPYIAYFGPIHPSSSNSGGTVSEASNFNHWNGSSVPSDMPTSYTFPAVDLHYHSWEHHSPPFSTASSRLVAADQPSVSPGSQRPARGGSDVPRSGSFMHPFLVGHSSAARVGSSVASSMIPPYPGSNARTRDRVQALQAYYQPQQPPNSTTMRTPIASGTRRSSSHNGSPQLAPITTSSDQSGGFFLIPSSSSGHNFQEENHHLPNHFHAWERDHLPSLSLSHVDRDSGWRAYHQATSRSDPASIIFSSQSGGKMSGRSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIQYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGGSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAFIRVREYDRAIAAAEVIAIVTGAEVGLQNQNTLDVQYLFQERWRGQC 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02211 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 437 512 IPR000504 GO:0003723
Gma20g02211 657 PANTHER OS09G0511500 PROTEIN 26 421 IPR044274 GO:0004842
Gma20g02211 657 MobiDBLite consensus disorder prediction 1 30 - -
Gma20g02211 657 ProSiteProfiles Zinc finger RING-type profile. 42 87 IPR001841 -
Gma20g02211 657 SUPERFAMILY RNA-binding domain, RBD 435 606 IPR035979 GO:0003676
Gma20g02211 657 CDD RRM2_SF2_plant_like 541 616 - -
Gma20g02211 657 MobiDBLite consensus disorder prediction 318 356 - -
Gma20g02211 657 SMART rrm1_1 438 508 IPR000504 GO:0003723
Gma20g02211 657 SMART rrm1_1 542 611 IPR000504 GO:0003723
Gma20g02211 657 Gene3D - 423 540 IPR012677 -
Gma20g02211 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 543 605 IPR000504 GO:0003723
Gma20g02211 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 439 506 IPR000504 GO:0003723
Gma20g02211 657 Gene3D - 541 618 IPR012677 -
Gma20g02211 657 CDD RRM1_SF2_plant_like 438 509 - -
Gma20g02211 657 CDD RING-H2 42 87 - -
Gma20g02211 657 MobiDBLite consensus disorder prediction 242 272 - -
Gma20g02211 657 MobiDBLite consensus disorder prediction 7 22 - -
Gma20g02211 657 SUPERFAMILY RING/U-box 41 89 - -
Gma20g02211 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 541 619 IPR000504 GO:0003723
Gma20g02211 657 SMART ring_2 42 86 IPR001841 -
Gma20g02211 657 MobiDBLite consensus disorder prediction 242 259 - -
Gma20g02211 657 PANTHER PROTEIN, PUTATIVE-RELATED 26 421 - -
Gma20g02211 657 Pfam Ring finger domain 41 87 IPR001841 -
Gma20g02211 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 96 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02211 Gma-Chr20 49204684 49219496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02211 401 599 Eukaryotic Initiation Factors Gene Family AT1G71770 22.927 3.88e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02211 - - gmx:100789014 822.772