Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02200 ATGTGTCATACTCAATGCATACATCGACATCAATTTGGAATTAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGGTATGCAATGTTATTCAAATTCAATCCGGGCCTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGTTGGATCATGGAAGTCTAGGCAACATGCTAAGATAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTGAAAGTGTAGCGGGATATGTACAGCGAATTGGACGTACTGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTTGCAAAGAGTGTAACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATCCACCACCTCCGCACCTACGTGATGTGCCTGAGTACCTATTAGACAAACCAACAAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATCCAAGAGAAAATTAA 786 0.402 MCHTQCIHRHQFGIRSAVLNPELPQNSRLHILEVCNVIQIQSGPDYLIATDLSQSKEKDEVPKESNVGSWKSRQHAKIKLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVQRIGRTGRAYNSGASVSLVSTDEMDTLEEIRSFVGDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYLLDKPTKEAREMVKLARDPREN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02200 261 PANTHER RNA HELICASE 16 209 - -
Gma20g02200 261 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 167 IPR001650 -
Gma20g02200 261 Pfam Helicase conserved C-terminal domain 9 121 IPR001650 -
Gma20g02200 261 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 16 209 - -
Gma20g02200 261 SMART helicmild6 3 121 IPR001650 -
Gma20g02200 261 Gene3D - 3 226 IPR027417 -
Gma20g02200 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 144 IPR027417 -
Gma20g02200 261 Coils Coil 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02200 Gma-Chr20 49118696 49120704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02200 88 144 Eukaryotic Initiation Factors Gene Family AT3G19760 36.842 9.22e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02200 K14810 - gmx:100785831 446.817