Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02199 ATGGATAACGCGCGATCGGCCAACGGCGAGGAGAATGCGGCGGGAATTCCGGACGATTTGCGGTGCAAAAGGTCCGATGGTAAGCAGTGGCGCTGCACGGCGATGTCGATGCCAGACAAGACCGTCTGCGAGAAGCACTACATCCAGGCCAAGAAGCGCGCCGCCAATTCCGCAATGAGGGCCAACCTCAAGAAAGCGAAGAGGAAGTCGCATTCACTGTCGTTGAACGAGTCCGATAATGTTTATTTGGAGAGCAAGAGCGATGACTTCGACCTTCCTCTCTCCTCCATTGGCCTCTCGCAGAAGAAGCTCTCCAAGAACGAGTTTCGCTACGAGCCTGAGCGCGACGCGCGAAGAGGCTCGTCTgcgagacgcgcttcgaacctcaacgatgatgatgatgatgatgatgatgatgatgttgtcgtggatgtggatggggatggggatggggatgtggCGCTCTATGAGGAAGAGAATTGGGTCTCCTATGATTCCCCGCCGGATTCTTCACGCAAGAGGTCTCGGAGGAGCTTGGAAGCTAATGCTGTGAGTTGTGTTGTGTGGCAGGAATATTCGGATGGAACATCCGGTTCGTCCGACGAGGAAACCGGCGGGCAGACTTGTCACCAGTGCCGGAGGAATGACCGCGATCGAGTTACTTGGTGTCAACGGTGTGATAGGAGGGGATATTGTGATAGCTGTTTATCAACATGGTACTCGGACATTTCATTGGATGAAATTCAGAGGATATGTCCTGCTTGCCGGGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCCATTAAGGTTCGGATACGCGAGATACCTGTTCTTGATAAGTTACAGTATCTCCACGTGCTGTTGTCGTCGGTGCTTCCGGTGGTAAAGCAGATCCACCATGAGCAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGATAAAATTGAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCTCAAACAGAGCAAGCAAAAACTTCTGATCGAAATATATTAAGTAAATTTCCGCATTGGAGATCCAATGACAACGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGTGGTTATTCTTCATTAAATTTAAGCCGAATTTTCAAGATGAACTGGGTTGCAAAGTTGGTCAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGCTGATGATCCACCGGAAACTGGGCGGAATGATCTCAGACTTTGCCAATATTCTCATAGAGAAGCCAGTGATGATAATTATCTTTATTGTCCAGCATCTGATGATATCAAAACTGATGGGATTGGCAGTTTTAGAAAGCATTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGAGGGATTCTAGAGACAACAGATGAGAAAGCAAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTTGAAGGGCATATTCTTGAAAATGGTTGGCCGCAGTTATTGAAATTGAAAGATTGGCCTTCACCTAGCGCTTCTGAAGAATTTCTACTGTACCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGAACTGGCAGATAACTGAAATTGAAATGATGCAAAAAGATAAAGCTAATAAGGAATCGGAGGCAAAAGAATCAGACAGGGATCCTCAAATATCTTCAGGGGGGAGTTCACCTGATTCCTTACTTGGTACAAAAAGTAGTGGACTGGAAATGGACTCAAACCAGAATAAGTCAATCATGGATCAAGGGTTTGAAATTTATTCTAGTGCTGAAGGTAATACGGCCAATTGTAAACTTCCGTTCACACAAAATGGAGATGTCTTTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGCCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTTGGGAAGTCAGATGATCTAGGAAATGAATTTGTTGAATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAAGCACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCAGCTGGTTGCCCTTTCCAAGCAAGGAATGTCCAGTCCAATGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCGTGGGTGATGCTGTAAGATTGGCAGAGGAAATTCGCTGTCTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAAAAACTTGTACTTGACCCAAAAGTTGGCGCAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTACGAGAAGATGGGTAGTTTTGATCAAATACCTAGGTGCTTGAGCATTCAAAGTAAAAAGCCTACCACCACGAGCGCAGCAGACGGAAACATTGTGCCGCCTAAACGAGGGACTCTCAACTCTGAACTCCAGTTCGTAGTATTTGACATTTCTAACGAAATCCTCTCAAACTTGATTTTATCAAGTTGCCCTGATCCTGTTATGCTTCGAACCACTGCTTCACCCACCTCATCTGGCCCCCCAAATGCTTCAATCCTAGTAAAAAGTGGAACCGGGGGATCCAATGATCGTTCCATCTCTCTTTTCTTAGCAGCGTCTGATCTCCCACCTAATTTGCTGGAATCCTTCCTTTGTGTCAACGCAACGGCTGTAGCCTCCAATGGGATAAAGCACGTCCAGCTTCAGATTACGCCCACTTTGTGGTGGCAAACCAAGAAGAAAACTAGTGATGCCTCTGAAAGGATCATCGCCGGAACATTGTGGTATTCGAATTGGTTTCCATACCCCAAACCTGGGTTGCACTGCCATACCCATGTGCTGTTCTAA 3351 0.4297 MDNARSANGEENAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSHSLSLNESDNVYLESKSDDFDLPLSSIGLSQKKLSKNEFRYEPERDARRGSSARRASNLNDDDDDDDDDDVVVDVDGDGDGDVALYEEENWVSYDSPPDSSRKRSRRSLEANAVSCVVWQEYSDGTSGSSDEETGGQTCHQCRRNDRDRVTWCQRCDRRGYCDSCLSTWYSDISLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHEQCFEVELEKKLRGAEIDLPRIKLNTDEQMCCNFCRIPITDYHRRCPSCSYDLCLNCCRDLREATADHNKEPQTEQAKTSDRNILSKFPHWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADDPPETGRNDLRLCQYSHREASDDNYLYCPASDDIKTDGIGSFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGHILENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKNWQITEIEMMQKDKANKESEAKESDRDPQISSGGSSPDSLLGTKSSGLEMDSNQNKSIMDQGFEIYSSAEGNTANCKLPFTQNGDVFEKTHPGVLWDVFRRQDVPILTKYLKIHWKEFGKSDDLGNEFVEWPLYDGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESVGDAVRLAEEIRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKVGAEIGYGDPNLTAMVSENYEKMGSFDQIPRCLSIQSKKPTTTSAADGNIVPPKRGTLNSELQFVVFDISNEILSNLILSSCPDPVMLRTTASPTSSGPPNASILVKSGTGGSNDRSISLFLAASDLPPNLLESFLCVNATAVASNGIKHVQLQITPTLWWQTKKKTSDASERIIAGTLWYSNWFPYPKPGLHCHTHVLF 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02199 1116 MobiDBLite consensus disorder prediction 684 698 - -
Gma20g02199 1116 ProSiteProfiles JmjC domain profile. 582 878 IPR003347 -
Gma20g02199 1116 SMART cupin_9 589 878 IPR003347 -
Gma20g02199 1116 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Gma20g02199 1116 MobiDBLite consensus disorder prediction 1 20 - -
Gma20g02199 1116 MobiDBLite consensus disorder prediction 1006 1025 - -
Gma20g02199 1116 Pfam WRC 17 57 IPR014977 -
Gma20g02199 1116 MobiDBLite consensus disorder prediction 699 724 - -
Gma20g02199 1116 SUPERFAMILY Clavaminate synthase-like 491 885 - -
Gma20g02199 1116 MobiDBLite consensus disorder prediction 108 176 - -
Gma20g02199 1116 MobiDBLite consensus disorder prediction 108 130 - -
Gma20g02199 1116 Pfam JmjC domain, hydroxylase 809 857 IPR003347 -
Gma20g02199 1116 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 937 IPR045109 GO:0032454|GO:0033169
Gma20g02199 1116 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 204 269 IPR018866 -
Gma20g02199 1116 ProSiteProfiles Zinc finger RING-type profile. 209 256 IPR001841 -
Gma20g02199 1116 MobiDBLite consensus disorder prediction 131 155 - -
Gma20g02199 1116 MobiDBLite consensus disorder prediction 684 724 - -
Gma20g02199 1116 Gene3D Cupin 470 887 - -
Gma20g02199 1116 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 937 - -
Gma20g02199 1116 Coils Coil 678 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02199 Gma-Chr20 49106124 49114959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02199 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.19e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma20g02199 JmjC 1.5e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02199 K15601 - gmx:100792166 1828.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02199 20 49106124 49114959 Gma20g02199 20 49106124 49114959 ECH
Gma10g01505 10 42162159 42170482 Gma20g02199 20 49106124 49114959 GST