Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02198 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGTAGTTAAGCAGCAACCTGAGATACTTGGTCAGTTCCATAGTCCACATTCTCATACTTCAACTACAACAACAACAAATAATAGCAATGGTTCCAACACAAACTCACAATCACCTGCACCTGTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATTGCTTTATCACCGACCACACTAATGGCTACGAACAGGTTCATATGTGAAATCTGCAACAAAGGATTTCAAAGAGACCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTCAAGCAGAGAACCAGCACAGAAATTCGAAAGAGGGTTTACGTGTGTCCAGAACCTTCGTGCGTCCACCACAACCCAGCAAGAGCACTCGGTGATCTCACTGGTATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAAtacgctgttcagtctgactggaaagcccactcaaaaatatgtggtacaagggaatacaaatgtgactgtggtaccatcttttccagAAGAGACAGCTTCATTACGCACAGAGCATTCTGTGACGCACTAGCGGAGGAGAACAACAAAGCCAACGAAGGACAATTGCCAAAGATAGGTCCAAACTTGCAATGCCAACAAATCCCAAACCTCGTTTCATCATCATTACCAATCAACACCAACATTGTTCCCAACCCACAAATGGGTGGCACCTCGGAGTTCAACCATGCTGATCACAAGCACCCACTATCACTCCCACACGAGCTCATGCCAATGCCTGCACAAAAATCCTTCAACAACATGGCTGCAGGAACAACAGTGTTCACGAGAAGCCTCTCATCAACCTCCTCTCCCTCTCTTCAACTAAGCTCAAACATGTTCGAGGAAAACGGGCTCCACCTTGCAGCAGGGTCGCCACACATGTCAGCCACTGCGTTGTTGCAAAAAGCTGCACAAATGGGAGCAACAGTGACAGAAAAAACCTTTGTAACAAACATGGCACCACCATCGTTTGGTGTGCTGCAACAGCATCATCAACAACCAAATGGACAACCCTTCATGAACCAATACATGCACAGTGGCCAGCAACAACAAGATGTTAACATTTCTGCTCAGTATAATAGTTTCGGTGCAAATGGGATGGGTGGAGGGAGCGTTGGGATGAACGGTGTGGACATGTTCAACGCTATTTTGGACCAAAGCAAGGCTTTGTCGAAGATCATGGAGCAAAACAATAGAAGCAGTAGTGGAGGACCAACAAATGGAGGTTCGAATAGTAGTGCTATTAACGTTGCTGGAAGTAAAGGAGGTAGTGGGGATGTTATGACTCTTGACTTTTTGGGCATAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGGGATGCACATGGAAATTTCTATGGTGGTGCTCAACAAGGGGAAACTGGTGCACCGGACGTGGTTTGGAGAAACTGGTCTAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACGAGCAGCATTTGA 1590 0.4384 MSNITSCDSGSFSTENTREDAVVKQQPEILGQFHSPHSHTSTTTTTNNSNGSNTNSQSPAPVKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSSLPINTNIVPNPQMGGTSEFNHADHKHPLSLPHELMPMPAQKSFNNMAAGTTVFTRSLSSTSSPSLQLSSNMFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFVTNMAPPSFGVLQQHHQQPNGQPFMNQYMHSGQQQQDVNISAQYNSFGANGMGGGSVGMNGVDMFNAILDQSKALSKIMEQNNRSSSGGPTNGGSNSSAINVAGSKGGSGDVMTLDFLGIGGGGGGGGGGGDAHGNFYGGAQQGETGAPDVVWRNWSSKNAGFESFSATSSI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02198 529 MobiDBLite consensus disorder prediction 1 72 - -
Gma20g02198 529 MobiDBLite consensus disorder prediction 1 20 - -
Gma20g02198 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gma20g02198 529 MobiDBLite consensus disorder prediction 31 62 - -
Gma20g02198 529 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gma20g02198 529 Gene3D Classic Zinc Finger 147 226 - -
Gma20g02198 529 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Gma20g02198 529 Gene3D Classic Zinc Finger 71 137 - -
Gma20g02198 529 SMART c2h2final6 92 114 IPR013087 -
Gma20g02198 529 SMART c2h2final6 133 163 IPR013087 -
Gma20g02198 529 SMART c2h2final6 168 188 IPR013087 -
Gma20g02198 529 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 8 479 - -
Gma20g02198 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 479 - -
Gma20g02198 529 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02198 Gma-Chr20 49099534 49103482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02198 52 350 IDZ Gene Family AT3G50700 56.923 2.54e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g02198 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02198 - - gmx:100785295 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01507 10 42174695 42178237 Gma20g02198 20 49099534 49103482 ECH
Gma20g02198 20 49099534 49103482 Gma20g02198 20 49099534 49103482 ECH
Gma10g00287 10 2621082 2624594 Gma20g02198 20 49099534 49103482 GST
Gma10g01507 10 42174695 42178237 Gma20g02198 20 49099534 49103482 GST
Gma19g01506 19 44423330 44426960 Gma20g02198 20 49099534 49103482 PCT
Gma03g01450 03 40719829 40723516 Gma20g02198 20 49099534 49103482 PCT
Gma19g02220 19 50978597 50982834 Gma20g02198 20 49099534 49103482 PCT
Gma03g02176 03 47211628 47214596 Gma20g02198 20 49099534 49103482 PCT
Gma20g02198 20 49099534 49103482 Gma19g01506 19 44423330 44426960 PCT
Gma20g02198 20 49099534 49103482 Gma03g01450 03 40719829 40723516 PCT