Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02195 ATGTTCTTGAATAGGTTTTCATTTCTAGAAATAGCAAAGACCTTTGTGGATTCCGAGCTAGGTGTTAGTGGACATAGTGGAGTTACTGGATCTGGTGGATCTATTGTGTTAGATCAGCATTCGCAGTGGATCTCGGCAAGCTCAACTGGCTGCAGAGTGTTGCATCACCTCTTTTGCTACTCGGTTGCCTCTACTGTGGATTCTGCTAAGGAAATAATGGATCAGGATGTGCAAGATAGAGCGTTGCCGATTGCAAATGTGGGTCGAATCATGAAGCAAATTCTTCCCCCCAGTGCAAAGATCTCTAAAGAAGGGAAACAACTAATGCAAGAGTGTGTGACAGAGTTCATAAGTTTCGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATTGGAAGATTGAACAAGTTGATGACAAGAAGAACGAACACTTCTAATTTTGTTGGATGTTGTGAGTGTTCCCATTGGCTCCGACCACGAAATTGCGGCATCGAGATTCATAACATTGCTTTGCTGCATAGCATTCCTTTTGAGGGAGTGGGGACTGACAATTATCAACCAATATGGCAAACCGCGTCAGATGTGCCTTTTTTTCAGGATCAGGGGCTTGTAGTCCATATCAGTTGCAGAACCTCAACACCACAAAAAGCTTTAATAGAGTACTCGTCGTGTACATTGTCTCTGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTACGCAACTCAAATGCACTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTTAGAAAATACAAAAGTCCTTCTGAGAAGGAATTGAAGCATATCAACCGAAAACTAAAGTCTTGTTGGGGTCATCACTCTCATGACGAGGGCAAGAAGCGGGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCAAATGAAGCTCAAAATATGCCATCTATTGCCTAG 1410 0.4184 MFLNRFSFLEIAKTFVDSELGVSGHSGVTGSGGSIVLDQHSQWISASSTGCRVLHHLFCYSVASTVDSAKEIMDQDVQDRALPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIGRLNKLMTRRTNTSNFVGCCECSHWLRPRNCGIEIHNIALLHSIPFEGVGTDNYQPIWQTASDVPFFQDQGLVVHISCRTSTPQKALIEYSSCTLSLEHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALRNSNALHRVIDFDSYLRGIFSRENSMHTMSELSESLDAIDSWVRKYKSPSEKELKHINRKLKSCWGHHSHDEGKKREKKSKHKSKKSSNEAQNMPSIA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02195 469 MobiDBLite consensus disorder prediction 429 469 - -
Gma20g02195 469 PANTHER CYCLIN-H 254 464 - -
Gma20g02195 469 Pfam Cyclin C-terminal domain 313 419 IPR031658 -
Gma20g02195 469 SUPERFAMILY Cyclin-like 313 438 IPR036915 -
Gma20g02195 469 Gene3D - 311 416 - -
Gma20g02195 469 Gene3D Histone, subunit A 70 172 IPR009072 GO:0046982
Gma20g02195 469 PRINTS CCAAT-binding transcription factor subunit A signature 147 165 - -
Gma20g02195 469 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Gma20g02195 469 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Gma20g02195 469 PANTHER CYCLIN 254 464 IPR043198 GO:0006357|GO:0016538
Gma20g02195 469 ProSitePatterns NF-YB/HAP3 subunit signature. 112 128 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma20g02195 469 Gene3D - 241 309 - -
Gma20g02195 469 SUPERFAMILY Histone-fold 78 158 IPR009072 GO:0046982
Gma20g02195 469 SUPERFAMILY Cyclin-like 254 310 IPR036915 -
Gma20g02195 469 CDD CYCLIN 258 301 IPR013763 -
Gma20g02195 469 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 81 145 IPR003958 -
Gma20g02195 469 MobiDBLite consensus disorder prediction 429 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02195 Gma-Chr20 49061141 49072412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02195 254 414 Core Cell Cycle Gene Families AT5G27620 65.217 4.30e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma20g02195 Cyclin_C_2 4.5e-10 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02195 K06634 - gmx:547736 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02195 20 49061141 49072412 Gma20g02195 20 49061141 49072412 ECH
Gma10g01510 10 42255398 42257979 Gma20g02195 20 49061141 49072412 GST