Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02174 ATGGTTGTTGCATCACCTGGAACCATTCAATCCACTGGTCAACCAGCCGCAACTCAGCTAGGACAACATCAACTTGCTTATCAGCAACaacagcagcagctgcagcagcggctccaagccttttgggcaaaccaatatcaagaaattaagaaggtgaccgatttcaagaaccacagcctccccttggcgaGGATCAAGAAGATTATGAAGGCTGATGAGGATGTCAGAATGATATCAGCCGAGGCGCCGGTCATATTTGCGAGGGCATGTGAAATGTTCATACTGGAGTTAACCTTGCGGTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTGCCTGTTACAGGGCCTGCTGAGGCACTTCCATATTGCTATATTCCACCTCAACATGCACAGCAAGTTGGAGCTGCTGGTGTCATGATGGGTAATAAGCCTGTGATGGACCCGTATGCTCAACAGTCTCATCCCTACAACATGGCACCACAAATGTGGCCACAACTACTACCACCACCACCACCAGAGCAACAACAGTCATCTCCAGATCAGTAG 672 0.3958 MVVASPGTIQSTGQPAATQLGQHQLAYQQQQQQLQQRLQAFWANQYQEIKKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASMPRGTVPVTGPAEALPYCYIPPQHAQQVGAAGVMMGNKPVMDPYAQQSHPYNMAPQMWPQLLPPPPPEQQQSSPDQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02174 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
Gma20g02174 223 MobiDBLite consensus disorder prediction 204 223 - -
Gma20g02174 223 MobiDBLite consensus disorder prediction 201 223 - -
Gma20g02174 223 Gene3D Histone, subunit A 21 137 IPR009072 GO:0046982
Gma20g02174 223 Pfam Core histone H2A/H2B/H3/H4 28 122 IPR007125 GO:0003677
Gma20g02174 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 223 - -
Gma20g02174 223 SUPERFAMILY Histone-fold 30 131 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02174 Gma-Chr20 48900555 48901226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02174 19 184 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.313 4.06e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gma20g02174 CBFD_NFYB_HMF 4.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02174 K08066 - gmx:100785287 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01534 10 42425705 42426499 Gma20g02174 20 48900555 48901226 ECH
Gma20g02174 20 48900555 48901226 Gma20g02174 20 48900555 48901226 ECH
Gma10g01534 10 42425705 42426499 Gma20g02174 20 48900555 48901226 GST
Gma19g02238 19 51100240 51102830 Gma20g02174 20 48900555 48901226 PCT
Gma03g02201 03 47391684 47392511 Gma20g02174 20 48900555 48901226 PCT
Gma20g02174 20 48900555 48901226 Gma19g02238 19 51100240 51102830 PCT
Gma20g02174 20 48900555 48901226 Gma03g02201 03 47391684 47392511 PCT