Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02171 ATGGAGGTTAATACTACAACCACTGTACCTGCAGGTCCACCAACTAGGAACCATTCTTACACACCACACCACTTACATTCAGAAAGACATAGCCATAGCCATGGCCATTTCCCCTCCAAAACCATTCTCATAATCATCGCATTGGTCACCTTAGTTACGGTCCTATTTATCATTTTTGTTGTTTTATTCTTGATCCGTCGCCAGAAATCCTTCAGCAAGAATGGAACTTGCGAAGAAGACAGCAGAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCAACAACGTTGAATTCTAGCCCAGATGCGAAAAGTGGGTGTCTCAATGGGGGAAATTTGAGCAGGACCCCAGCACCTAAATTTAGAGGAGTACAAGTGTTCACCTATAGGGAATTAGAAATTGCCACGGATGGATTCAGCGAAGCAAATGTGATTGGTAGTAATGGAATTGGAGGGCATGGTTTGATGTACAGAGGTGTTCTAAGTGATGGCACTATGGCAGCAATTAAGTTGCTTCACACTGAGGGTAAGCAAGGGGAGCGTGCCTTCAGAATAGCGGTCGATCTCCTGAGTCGCTTGCACTCTCCTCATTCGGTGGAGTTACTTGGCTATTGTGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCAATGGAACCCTCCACTACCATCTTCACACCCTCAACGATCAAACTCGGCCGTTGGATTGGTGGGGCCGGATGAGGATAGCCCTtgattgtgccagggcactggaattcttgcatgaacatgcagtctctcctgtgatccacagagacttcaagagtaacaacgttctactggatcaaaacttgcgtgccaaggtgtctgattttggattgcctaagatgggatcagacaagaggaacggtcaggtttccacccgtatgttggggaccactggatatttggcaccagaGTACGCCATGGGTAAGCTTACTACAAAGTCAGATGTTTACAGCTATGGCGTGGTTCTTCTTGAACTGCTCACGGGGCGTGTGCCAGTTGATATCAAGCGGGCCCCAGGAGAACACGTCCTTGTCTCTTGGGCTCTCCCAAGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGACCCAGCTCTACGTGGACAGTACTCAAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCACTGATACCACTTGTTAGGAACCAATCCTCTCTTAGTTCATCTAGCTCCCTACGATTTCAGAAACAAACGCCAAGTCCAAGTCATTAG 1326 0.3929 MEVNTTTTVPAGPPTRNHSYTPHHLHSERHSHSHGHFPSKTILIIIALVTLVTVLFIIFVVLFLIRRQKSFSKNGTCEEDSRELHDTSSRLITSTTLNSSPDAKSGCLNGGNLSRTPAPKFRGVQVFTYRELEIATDGFSEANVIGSNGIGGHGLMYRGVLSDGTMAAIKLLHTEGKQGERAFRIAVDLLSRLHSPHSVELLGYCADQHHRLLIFEYMPNGTLHYHLHTLNDQTRPLDWWGRMRIALDCARALEFLHEHAVSPVIHRDFKSNNVLLDQNLRAKVSDFGLPKMGSDKRNGQVSTRMLGTTGYLAPEYAMGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVVQSLIPLVRNQSSLSSSSSLRFQKQTPSPSH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02171 441 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 2 440 - -
Gma20g02171 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Gma20g02171 441 Gene3D Phosphorylase Kinase; domain 1 112 217 - -
Gma20g02171 441 Pfam Protein tyrosine and serine/threonine kinase 151 414 IPR001245 GO:0004672|GO:0006468
Gma20g02171 441 SUPERFAMILY Protein kinase-like (PK-like) 121 414 IPR011009 -
Gma20g02171 441 ProSiteProfiles Protein kinase domain profile. 142 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02171 441 MobiDBLite consensus disorder prediction 75 95 - -
Gma20g02171 441 PANTHER OS01G0750732 PROTEIN 2 440 - -
Gma20g02171 441 Gene3D Transferase(Phosphotransferase) domain 1 218 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02171 Gma-Chr20 48872839 48875722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02171 107 439 Receptor kinase-like Gene Family AT3G58690 59.531 6.00e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gma20g02171 PK_Tyr_Ser-Thr 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02171 - - gmx:100499645 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02171 20 48872839 48875722 Gma20g02171 20 48872839 48875722 ECH
Gma10g01537 10 42450832 42453969 Gma20g02171 20 48872839 48875722 GST