Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02169 ATGAATTACTCAAACCGAAATGGAGGAATTTGTATCCTTCTCTTTTTCTTCCTCCTTCCTTTTGCTGCGGCACAACATGGCAACCAAAACGAATCGTATTACAACAAGTTCAGCCCTTCCATGGCGATCATAATCGTGATCCTCATCGCCGCGCTGTTTCTAATGGGCTTCTTCTCCATCTACATCCGCCACTGCTCCGGCTCCCCCTCCGCCAGCATCCGCAACCTCCCTGCCGCCTCCGGGAGGTCGCGGCGCGGCTCGCGCGGGCTCGACCAGGCGGTGATCGACACGTTCCCGACGCTGGAGTACTCGACGGTGAATATCCACAAGCTGGGAAAGGGGACGCTGGAGTGTGCGGTGTGCTTGAACGAGTTTGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTGTTCCACCCCGAGTGCATCGACGAGTGGCTAGCTTCCCACACCACTTGCCCCGTGTGCCGCGCCAACCTCGTCCCCCAGCCCGGCGACTCCGTCCACGGAATCCCCATCCTCGACGCTCCTCAAGGCATCGAGGCCCAACAGCAACAAGACCCCAAGGCCGAACCTCAAGTGCTGACACTAAACCAGACGCTGAACCGGAACCGCACCAGAGGCTCCCAGTCGGGCCGGCCCCGGCGGTTCCCGCGCTCACACTCGACCGGCCATTCTTTGGTCCAACCTGGCGAGGATACTGAACGGTTCACTCTGAGGCTTCCCCAGGAAGTTAGAAAGCAGATACTGCATCGCGCGAGAAGCTTGGTTATCTTACCGAGAGAAGGTAGTTCGCGGCGGGGATATCGAACCGGTGAGGGAAGTAGCAGAGGGAGGTCCTCGAGGCGGTTGGACCGGTGGGTTTTCAGCATGGCGCCGGCTTTCTTTGTGAGAGCGTCGTCGATTAGGTCGCCCAGGGTGGCCAATAACGGCGCCGACGGAACTTCCGCTACTGCGCCTTTGCCGCCTGCTGTGGAGTCTGTTTGA 996 0.5944 MNYSNRNGGICILLFFFLLPFAAAQHGNQNESYYNKFSPSMAIIIVILIAALFLMGFFSIYIRHCSGSPSASIRNLPAASGRSRRGSRGLDQAVIDTFPTLEYSTVNIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSVHGIPILDAPQGIEAQQQQDPKAEPQVLTLNQTLNRNRTRGSQSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPQEVRKQILHRARSLVILPREGSSRRGYRTGEGSSRGRSSRRLDRWVFSMAPAFFVRASSIRSPRVANNGADGTSATAPLPPAVESV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02169 331 CDD RING-H2_EL5_like 117 160 - -
Gma20g02169 331 SUPERFAMILY RING/U-box 113 167 - -
Gma20g02169 331 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 257 - -
Gma20g02169 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Gma20g02169 331 Pfam Ring finger domain 117 160 IPR001841 -
Gma20g02169 331 SMART ring_2 118 159 IPR001841 -
Gma20g02169 331 MobiDBLite consensus disorder prediction 311 331 - -
Gma20g02169 331 MobiDBLite consensus disorder prediction 203 238 - -
Gma20g02169 331 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Gma20g02169 331 PANTHER RING FINGER DOMAIN-CONTAINING 11 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02169 Gma-Chr20 48863446 48864441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02169 8 321 Rapid Response to Elicitors AT3G05200 48.974 4.15e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02169 K10664 - gmx:100783688 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02169 20 48863446 48864441 Gma20g02169 20 48863446 48864441 ECH
Gma10g01540 10 42473098 42474507 Gma20g02169 20 48863446 48864441 GST
Gma19g02243 19 51139750 51141461 Gma20g02169 20 48863446 48864441 PCT
Gma03g02206 03 47423239 47424938 Gma20g02169 20 48863446 48864441 PCT
Gma20g02169 20 48863446 48864441 Gma19g02243 19 51139750 51141461 PCT
Gma20g02169 20 48863446 48864441 Gma03g02206 03 47423239 47424938 PCT