Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02168 ATGGCACTAGAGGCAGTGGTATTTCCACAATCACAAGACCCTTTTGGTGGTAGTGGTTACGGATCAGTGAATAATAAGGACTTCTACAACTGCACCTTGTTGGCTGCTACTTCACCCAACTCATGGGGGGACTATGAGCAACACATCAACATCAACAAAGAAGAAGAACAAGGTGGTGCTTCTATCTCCACTTTTCAACCAGAGAGTAATTACCCTTATGGAAATTGGACCAGCTCCTCCTCATCTATGTTACCCCACTTCAACAATGAACTTCAAGAAACCACTACTACTGACCCCAGTAACACCTTAGATAGCTTAAACACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAAGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAACGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTTATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAAGAGCTTGAGCAGAGGATGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGGGAAATCTGAGGCTGGTGGTGCAACAAACATGCCCTTTTCTGAGTTCTTCACCTTTCCTCAGTATTCAACTAGTGGTGGTGGTGGTTGCTCTGATAATTCTGCAGCCGTAGGTGAAGACGTGGGTGAGGTTAAGTGTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAGCAGCTCTTGAAGTTGGTTTCTGGTTTGCATACCATGCGCCTCACAATCTTGCACCTAAATGTTACTACCACCGGTGAAGTTGTTCTCTACTCTCTTAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTTGATGATATAGCTGCAGCTGTGTACCAGATGCTAGATAAAATTCAGCAAGAGGCAATGTTGAATTAA 987 0.4367 MALEAVVFPQSQDPFGGSGYGSVNNKDFYNCTLLAATSPNSWGDYEQHININKEEEQGGASISTFQPESNYPYGNWTSSSSSMLPHFNNELQETTTTDPSNTLDSLNTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRMHFLGAQKEGEGKSEAGGATNMPFSEFFTFPQYSTSGGGGCSDNSAAVGEDVGEVKCGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDKIQQEAMLN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02168 328 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 328 - -
Gma20g02168 328 SMART finulus 132 183 IPR011598 GO:0046983
Gma20g02168 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 177 IPR011598 GO:0046983
Gma20g02168 328 PANTHER MAX DIMERIZATION, MAD 1 328 - -
Gma20g02168 328 Gene3D - 108 191 IPR036638 GO:0046983
Gma20g02168 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 189 IPR036638 GO:0046983
Gma20g02168 328 MobiDBLite consensus disorder prediction 92 106 - -
Gma20g02168 328 MobiDBLite consensus disorder prediction 92 122 - -
Gma20g02168 328 CDD bHLH_AtFAMA_like 129 201 - -
Gma20g02168 328 Pfam Helix-loop-helix DNA-binding domain 127 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02168 Gma-Chr20 48839908 48841673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02168 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.880 1.21e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma20g02168 HLH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02168 - - gmx:100779213 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02168 20 48839908 48841673 Gma20g02168 20 48839908 48841673 ECH
Gma10g01541 10 42504564 42506348 Gma20g02168 20 48839908 48841673 GST
Gma19g02244 19 51161057 51162598 Gma20g02168 20 48839908 48841673 PCT
Gma03g02207 03 47445947 47448104 Gma20g02168 20 48839908 48841673 PCT
Gma20g02168 20 48839908 48841673 Gma19g02244 19 51161057 51162598 PCT
Gma20g02168 20 48839908 48841673 Gma03g02207 03 47445947 47448104 PCT