Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02149 ATGGTTTTTGAAATCAGTACTGTTGTTTCAAAATTGCAAACGTTATCCACCTCAGACCATGCCTCCGTGGTCTCCATGAACTTATTTGTGGCACTTCTTTGTGGTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTGGTGTTTGCACTGGCATAGTCATTTTGCTGTTTAGTGGTGGCAAAAGCTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCGCCTATAATATTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCATGTTGTTTGGTGCTATTGGCACATTAATATCTTGTACCATCATAACTTTGGGTGCCACACAAATTTTTAAGAGGTTGGATGTTGGTCCACTGGAATTAGGGGATTTCCTAGCAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAGGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACCAAATCGACCCTTCAATTGCTGGGCACTTTTTGGGAAATTTCTTGTATCTATTTATTGCAAGCACAATGCTTGGAGTGTTGACAGGTCTACTTAGTGCTTACATTATTAAAAAGCTGTACATTGGCAGGCACTCTACAGATCGCGAGGTTGCTCTTATGATGTTAATGGCATACCTCTCCTACATGCTTGCTGAATTGTCCTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTCATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCAACCTTGTCTTTTGTTGCTGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAAAAATGGAAATTTGTCAGTGATAGCCCTGGAACATCTGTAGCAACTAGTTCAGTATTGTTGGGTCTAATTCTTCTTGGAAGAGCAGCTTTTGTTTTCCCCTTATCCTTCCTATCCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAAGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTGCATATAATCAGTTCACCATGTCGGGGCACACTTCACTAAGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGGTGTTTGGTCTGTTGACTAAGCCACTAATAAGGCTTTTACTGCCCCATACTCCACATCATAAAGAATCAAGCATCACGATAACCACAGATCCATCTACTCCAAGTCCAAAATCAGTCACTGTCCCACTTCTTGGGAGTGCCCAAGAATCTGAAGTCGATATTGATGGCCATGATATTCATCGTCCAAGCAGCATCCGTGCTTTACTTTCCACTCCAACACACACTGTTCATCGCTTGTGGCGTAAGTTTGATGATGCATTCATGCGTCCTGTTTTTGGTGGCAGGGGTTTTGTTCCTATAGAACCTGGCTCACCAACTGAACGTAATGGCCATCAATGGCGTTGA 1641 0.418 MVFEISTVVSKLQTLSTSDHASVVSMNLFVALLCGCIVLGHLLEENRWMNESITALLIGVCTGIVILLFSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCTIITLGATQIFKRLDVGPLELGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNQIDPSIAGHFLGNFLYLFIASTMLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELSYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSVATSSVLLGLILLGRAAFVFPLSFLSNLAKKSPNEKISFRQQVIIWWAGLMRGAVSIALAYNQFTMSGHTSLRSNAIMITSTITVVLFSTVVFGLLTKPLIRLLLPHTPHHKESSITITTDPSTPSPKSVTVPLLGSAQESEVDIDGHDIHRPSSIRALLSTPTHTVHRLWRKFDDAFMRPVFGGRGFVPIEPGSPTERNGHQWR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02149 546 Pfam Sodium/hydrogen exchanger family 28 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Gma20g02149 546 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 27 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gma20g02149 546 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gma20g02149 546 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gma20g02149 546 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gma20g02149 546 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gma20g02149 546 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 545 - -
Gma20g02149 546 PANTHER SODIUM/HYDROGEN EXCHANGER 7 545 IPR018422 GO:0006812|GO:0015299|GO:0016021
Gma20g02149 546 Gene3D - 146 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02149 Gma-Chr20 48711832 48716593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02149 6 544 Antiporters AT3G05030 77.264 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02149 - - gmx:732573 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02149 20 48711832 48716593 Gma20g02149 20 48711832 48716593 ECH
Gma10g01563 10 42663084 42669634 Gma20g02149 20 48711832 48716593 GST
Gma19g02275 19 51396320 51399868 Gma20g02149 20 48711832 48716593 PCT
Gma03g02237 03 47656812 47660643 Gma20g02149 20 48711832 48716593 PCT
Gma20g02149 20 48711832 48716593 Gma19g02275 19 51396320 51399868 PCT
Gma20g02149 20 48711832 48716593 Gma03g02237 03 47656812 47660643 PCT