Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02130 ATGGCGGACAAGGCAGTCACCATCCGAACCAGAAAGTTCATGACAAACAGGCTTCTCTCCAGAAAGCAATTCatcgttgatgtccttcatccagggagggctaatgtttccaaggctgaactgaaggagaaattgggcagaatgtatgacgtgaaagacactaacactgtatttgtcttcaagtttcgaactcattttggtggtggcaagtccactgggtttggtttgatctatgattcagttgagaatgccaagaagtacgagcctaagtacaggcttatcaggAATGGACTTGATACTaaagtagagaaatcaaggaagcaaatgaaggagagaaagaatagagctaagaagattcgtggagttaagaagacaaaggcttccgatgctgccaaggctggaaaaaagaaatga 414 0.0966 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02130 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Gma20g02130 137 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Gma20g02130 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gma20g02130 137 Gene3D - 1 132 - -
Gma20g02130 137 MobiDBLite consensus disorder prediction 102 137 - -
Gma20g02130 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Gma20g02130 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Gma20g02130 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02130 Gma-Chr20 48563628 48565447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02130 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 84.848 1.23e-82 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02130 K02974 - gmx:100499673 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02130 20 48563628 48565447 Gma20g02130 20 48563628 48565447 ECH
Gma10g01579 10 42863361 42865456 Gma20g02130 20 48563628 48565447 GST
Gma19g02287 19 51603683 51605598 Gma20g02130 20 48563628 48565447 PCT
Gma03g02252 03 47843782 47845673 Gma20g02130 20 48563628 48565447 PCT
Gma20g02130 20 48563628 48565447 Gma19g02287 19 51603683 51605598 PCT
Gma20g02130 20 48563628 48565447 Gma03g02252 03 47843782 47845673 PCT