Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02129 ATGAATGGGGTCACACACCTTGAACCAGATGAGTCTGAGTTTGTTGAAGTTGATCCAACTGGAAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGTTGTATGATTTCCTGCAAAGCCCTGAAGATCTTGAAAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCACAGTCACGACCCGCCTGTGATCCATAGAGATCTAAAATGTGATAATATTTTTGTCAATGGAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCTCATGCTGCTCATTGTGTAGGGACGCCCGAGTTCATGGCCCCAGAAGTATATGAAGAGGCATATAATGAGTTAGTTGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAGAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAAAAATGCTTGGTCACAGTGTCTCTAAGGCTTTCTGCAAGAGAGCTTCTAAATGATCCATTTCTTCAAATTGATGATTATGAATATGATTTGAAAACTGTTGAAAATGGAGAACTGGATGAATTTGGTTCTCTCATGAGGCAGCCATTCTTTGATCTTCATCGAAGCTATAGCAACTTCAGTAATGAATACTCAAATGGCTTTGGGTATGAAGGAGACTGGGGTCCTCATCCAGCTGAGATCGAACCTAGTGGAATTGAACTTTTTGAGTACCATGATGATGACGAACCCTCTGAAGATGTCGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATCCGAAATATTTATTTCCCATTTGACATAGAGCTGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAGCTGGACATGACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCGTCCTTGGTACCTGAATGGAGACCAGGACCAGGAATTGATGAGACTCCTCGTTATGCTAATGAAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGGGGAGATTACCTTCCAATCTGAAGAAGTCTGATCAAAGCCATTCTGACGAACAATGTGAGCAATTAGATAAACCGATTCCGGCTAAAGACAAAGCACAGGATGTTTGGGAAAAAAAGTTTTCCCCCAATGCAGCAAATTCTCTAAGAAATTTATCAGGAAGTCATGATTTCTCTACTATCCGATCGACCTATTGCGACCTTGAGGATGACTATGAGAAAGAGATCCAAAAGGAACTCAGATGGCTCAGAGCCAAGTACCAAATGGAGTTAAGGGATCATAAGGATGGACAGTTTGGGCAATGCTCACATAGTAGTAACAGTGAGCACAGAACAGAAAATGGCTTTTTGTCACCTTCACTGACAGAAACATTAAAAGGAGGCAACAATGGGACTCGGTTGAAACCCATTACTACTAAGTGGAATTGTGATTCCAGTAGCCACCCTCATGTCCATGAAAGCAGCCCCAATTCGGACACCCAAAGGGCCCAAAATTGTGAGGCGATTGAATCCCCTGGAGAAGGATTTTCAATTTACCCACATGGAAATCGGTAG 1941 0.4194 MNGVTHLEPDESEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILSGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYRVKDPEVRQFVEKCLVTVSLRLSARELLNDPFLQIDDYEYDLKTVENGELDEFGSLMRQPFFDLHRSYSNFSNEYSNGFGYEGDWGPHPAEIEPSGIELFEYHDDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIELDTAISVATEMVAELDMTDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRYANEGMDVLQCMGGLGRLPSNLKKSDQSHSDEQCEQLDKPIPAKDKAQDVWEKKFSPNAANSLRNLSGSHDFSTIRSTYCDLEDDYEKEIQKELRWLRAKYQMELRDHKDGQFGQCSHSSNSEHRTENGFLSPSLTETLKGGNNGTRLKPITTKWNCDSSSHPHVHESSPNSDTQRAQNCEAIESPGEGFSIYPHGNR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02129 646 CDD STKc_WNK 22 281 - -
Gma20g02129 646 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 428 IPR024678 GO:0004674|GO:0005524
Gma20g02129 646 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Gma20g02129 646 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02129 646 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 472 634 - -
Gma20g02129 646 MobiDBLite consensus disorder prediction 472 488 - -
Gma20g02129 646 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Gma20g02129 646 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 454 - -
Gma20g02129 646 MobiDBLite consensus disorder prediction 562 629 - -
Gma20g02129 646 MobiDBLite consensus disorder prediction 559 646 - -
Gma20g02129 646 MobiDBLite consensus disorder prediction 468 488 - -
Gma20g02129 646 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gma20g02129 646 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02129 646 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02129 646 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 454 - -
Gma20g02129 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gma20g02129 646 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 472 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02129 Gma-Chr20 48556305 48559683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02129 1 553 MAP Kinase Kinase Kinase AT3G22420 53.445 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gma20g02129 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02129 K08867 - gmx:100272198 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02129 20 48556305 48559683 Gma20g02129 20 48556305 48559683 ECH
Gma10g01580 10 42872932 42876461 Gma20g02129 20 48556305 48559683 GST
Gma19g02289 19 51621223 51624484 Gma20g02129 20 48556305 48559683 PCT
Gma03g02254 03 47854166 47857218 Gma20g02129 20 48556305 48559683 PCT
Gma20g02129 20 48556305 48559683 Gma19g02289 19 51621223 51624484 PCT
Gma20g02129 20 48556305 48559683 Gma03g02254 03 47854166 47857218 PCT