LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma20g02124	ATGGCTCCTCATCCAAGAGTCATTAAGGCTTATAATGCTATGAGATCCTTAGGAATTTCTGATGAAGAGGTGAAACCGGTGTTGAAAAATTTGTTACAATTGTATGATAGAAACTGGGAACTTATTGAAGAAGACAATTATCGTACTCTTATAGATGCATACTTTGAGTTAAAGGAAGCTAAGCAAACAGAAGGTAAGAGAAAGGCTCCAATCAGTTATCTTAATGGGAGAAAGCCAAAACAGGAACTGCACTTGGTAGATGGAGATGACCAGGTTTCATCAACTGACAACTCCAGTCAAGGGTTGTCTGTAGAAGACTCGGAAATAACTCCCAACGCATTTAAACAGAAAATCATTAAATCTTCTCAAACCTCCATTGTACATATGAAGCCCACGAGCAGTTCACAAGCATTGCAGAGAATGTCGAGTGAGGTAGAAAGGATCTCAACTTTACCTTGCATGCCTGCTAGAGATAGAAAATTGCATCGTGGGAAGGCATCAGCTGCAGGGCATTGTGAAGATCCAATTGATGAACCAAGCAATCCTCGTGTCCAGAGGAAAAATATATCAAATGATCATCAACAGAAGGAGCTGATGATACCAAGAACTGAGAAACTTAAGTTACATCTTGGACCTGTTTCAACGAGTTACAATGGCTCAGCTAATGCTTCAAATGGAAATTGTTGTGCCAAATCTCTATCAGCTCTGTATCAGAATGTGCCCAAGAAAGATGCTACCTCAGCATGCAATAATAGTAAAAGAACTCAGAAGGGTAGTATTGACATTGCCTCTTCACCTTTGGGAGAAATTAAAATTTCTTTAAACTGCGAAGCTGCTTTGGGACAACCAAACTTCCGTATTCCTGATTTGGATGCTATCATGAAATCCATTGAGGAGAAATACCTGAAGGCTCACAAGATAGTCGAGCCTCAATCATCTATGGTTAAGCTATTAGATGATTTATGTGGAATTTACTTGAAGCTGGGCTTGAGTTTAAATCGAAACGGGTCAACTCCCAAGTCTGCAAATTCACGCAATGTGGCATGTCTGCCACTGCAAGCTGTTACTGAAGATGACAAGAATTCCTTTCACTTTCTCGATGACATAACAAAAGGTTCCGAGAATGTTAAAATATCACTGTTGGATGAAACTGGAAGTGAGGACGTGCCTCAGTTTAATTACATACCCTATAATGTAATATATCAAGATGCTAACGTCAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTATCACTTCCATGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTACACTCCACGAGGCTTGTTGAAAGAAATATTTTTAAAAGATTGCATGTCTATGAAATTGGAACCTCTAGATCATCATTTTGTGTATTGCCAAGAATGCCCAGTGGAGAGGTCCAGGAATGACATCATGGCCGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCGAGAAGGAAAGGGATGGGGCATCAGAACTCTAGAAGATTTGCCCAAGGGATGTTTTGTATGTGAATATGCAGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTATGCAGAAAAGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCGGACGCAAATCTGATAGACATTCCAGTTGAAGTAGAGACACCTGATCGTCACTATTATCATCTTGCTCTCTTCACAAACAGAAATGTGAATGCATACGAGGAATTGACATGGGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTGGCTTCTGTCGTGATAAGAAACAAAAAGGAACTAGATTATTGAAAGGTAAAAAACTCAAGGAGATACATGCCAGAAAGACGGAGTAG	2118	0.4046	MAPHPRVIKAYNAMRSLGISDEEVKPVLKNLLQLYDRNWELIEEDNYRTLIDAYFELKEAKQTEGKRKAPISYLNGRKPKQELHLVDGDDQVSSTDNSSQGLSVEDSEITPNAFKQKIIKSSQTSIVHMKPTSSSQALQRMSSEVERISTLPCMPARDRKLHRGKASAAGHCEDPIDEPSNPRVQRKNISNDHQQKELMIPRTEKLKLHLGPVSTSYNGSANASNGNCCAKSLSALYQNVPKKDATSACNNSKRTQKGSIDIASSPLGEIKISLNCEAALGQPNFRIPDLDAIMKSIEEKYLKAHKIVEPQSSMVKLLDDLCGIYLKLGLSLNRNGSTPKSANSRNVACLPLQAVTEDDKNSFHFLDDITKGSENVKISLLDETGSEDVPQFNYIPYNVIYQDANVNISLARIADEGCCADCAGDCLSLSLPCACSQETGGEFAYTPRGLLKEIFLKDCMSMKLEPLDHHFVYCQECPVERSRNDIMAEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTREGKGWGIRTLEDLPKGCFVCEYAGEILTNTELYERIMQKSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHEHPIKAFNCCCGSGFCRDKKQKGTRLLKGKKLKEIHARKTE	705

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma20g02124	705	MobiDBLite	consensus disorder prediction	90	107	-	-
	Gma20g02124	705	ProSiteProfiles	Pre-SET domain profile.	418	521	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Gma20g02124	705	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN	1	702	-	-
	Gma20g02124	705	ProSiteProfiles	SET domain profile.	524	658	IPR001214	GO:0005515
	Gma20g02124	705	CDD	SET_SETDB-like	390	658	-	-
	Gma20g02124	705	Gene3D	-	1	60	IPR043017	-
	Gma20g02124	705	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	704	IPR025776	-
	Gma20g02124	705	SUPERFAMILY	SET domain	376	681	IPR046341	-
	Gma20g02124	705	MobiDBLite	consensus disorder prediction	86	107	-	-
	Gma20g02124	705	SMART	set_7	524	664	IPR001214	GO:0005515
	Gma20g02124	705	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	702	-	-
	Gma20g02124	705	Pfam	SET domain	536	658	IPR001214	GO:0005515
	Gma20g02124	705	SMART	preset_2	366	508	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Gma20g02124	705	Gene3D	SET domain	347	669	IPR046341	-
	Gma20g02124	705	Pfam	Ubiquitin-binding WIYLD domain	6	59	IPR018848	GO:0018024
	Gma20g02124	705	Pfam	Pre-SET motif	369	516	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma20g02124	Gma-Chr20	48508515	48515331	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma20g02124	500	673	C2H2 Transcription Factor Family	AT2G23740	43.094	2.44e-31	129

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Gma20g02124		Pre-SET	1.9e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma20g02124	-		-	gsj:114402909	1411.74