Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02121 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTCCAATGATGATTCAGATGATGAGGAATCTTTAGTTCCTGAAATAGATGATGGAATGCGTCTTGGGGAGTCATTAACAGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCTCAAGAGGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAACAAAATCTTCAAGGGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGCTCTCTGGCAACTGCTGAAATTTCTGAGTCAATTGCTGATGCTGAGAAACATCTGCAAGTAAACAGACCTGTTAGAAGGCGGCATGGTAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAGACTCTGTGATGAATCCCAAGAGCCAGTAAAGAATGAGGGGGATTGGGATCTGTTCAATAAAATAGTTTCTGATGGGAGTGGCACTGATGCTTCATTTGGCAGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGAAATTCTACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTAGTCAAAGAAGAGGATGATGCAATTGTAGATAGGAAACTTCAAATCCGTTTGAAACATAGGAGGCAAAAAAGGAAAAGTAAACAGCGAGAAATGAGCACACCTATGCTGTTGACGGAGAACCACATACAGAAACCTTCATTTGTTGATAATTTAAGCCCTGCTGTGAATGAAGGAACTAGCGATGATGGGAAAATTGTGTCTGACAGTGGCAAGGATGCATGTGTGCTTATGGAGGCTGATAAAATTAAAGTTTTTGATGCCAGTCATCATGTTGACAAAGAAAAACTTACGAGTACTGGTGGCTTGTCAGATGATATTGAACAGAGAGGAATCAAACGTGTAAACAGTGGGGAGCTTGATGCTGACAATAAAAAGTGTCGGATTGTTGTTATTGACAGTAATAATGAAGCAGAGGTCACTGAAAATAAATTAGATTGCAATACTCAAGAGGTAAAAGAAGATTTATGTAACAATGGTGGTGCTTCTCTTCCTTCGGAGTGTCTGGATGAAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCCCTTGAAGTGCATCCACACCCTTTCTTGAAAGTGATTACTTGTGGAGATTGCAATTGCTTATTAAAAGAAAAGACACATAAAAAGGATCAGGGACAAGATTGTTCTGAGGGTTACTGTACATGGTGTGGAGGAAGCAGTGAATTAGTTTGTTGTAAATTATGCAAGATTTTATTCTGCACCAAATGTTTAAAGAAGAATATTGGTGTAGAATTGGTTCCTGGAGTTGAGGACACTAGCTGGCATTGTTGTTGTTGCCATCCAAATCTTTTGCAAAAGCTGTCCTTGCAACTAGCGAAAGCTGTGGGGGCTGCTGATTTAATAGTTTCCAGTTCTGGTAGtgattcagatagttcagatgattcagataattcagatgactcagatgattcagatgCGAAGGTTAATGTTACAATCAGCTCCAAGCGAAGACACAAAAAGAAGATTCGGAGGATACTCGATGATGCTGAATTAGGAGAAGAGACAAAGAGGAAAATTGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGGACAGTTTTCTGCTTCGTCATTTGAAATGAGCTCTGACGGCTGTAATGGGAATTTATCAGAAAGTGCAAGTGTTGAAGTTCTTGGTGATGCAGTAGCAGGTTACATTGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCCGCTAAACTGAAGGCTCATCAGATTACTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACTGTGCTTATAGTCACACCTGTCAACGTGCTACATAATTGGCGTCAGGAGTTCATCAAATGGAGACCTTCTGAGTTAAAGCCACTCAGGGTCTTCATGCTGGAAGACGTATCAAGAGATAGAAGGGCAGAATTGCTTGCAAAATGGAGATCTAAAGGTGGTGTCTTTTTGATTGGTTATGCTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGCACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGACGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCACTTACTGGATCACCTCTTCAAAACAATCTCATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCAATAGAGAATGGACAGCACACCAATTCAACTCTGATCGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAACAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTCGTGATAACTGTCAAGCTATCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACTCAGGTGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGTCAAGGACTATGTAAAACACGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTACAGTGATGAGAATTCTGATTATAATGTACTTGCTGGAGAGAAGATGAGGTATGGAAATGACTTGCTGCAAAGGAAAGATGACAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGATTGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACCATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGCAAACAAGGGAAGTTTTGGAAGAAAGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGAGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACGTATGATCTCCAGGCCATCTATCGATCATGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAGGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGACTTGCTGCTAGGGTGGTTGATAGACAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTGTTTGAGCTTGGTGATGATGACAACCCTGAGACTTTGGCTGATCTAAGTCAAGAAAATGAGCATCAAGACAACCCTATTTTGGTTGGGCATTCACTGAAACACACAGCACCACATTCAAATGGCAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCGCGGTGGATTGCCAATTTTCATGAACATGAATCCCTGCTACAAGAAAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCAGAAATCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTATGCCTGAACAGAAGCCAGAAATGCCAAATGCAATGCCCCAAAATGTATCAGAAAGCTGCAGCATCTTGCCAACTAAACTAAGCAGACGTTTCACGACACGGAAATGTACCAACCTTGCACATATGTTGACACTTCGAAGCCAAGGAACAAAATTTGGATGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAGGACTTGAAGAAGAGATAG 4461 0.4069 MEGKTEDEVVDIESASSGSSNDDSDDEESLVPEIDDGMRLGESLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVADEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEREAPNVCSTEAWKKRNHWVGSLATAEISESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKRLCDESQEPVKNEGDWDLFNKIVSDGSGTDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSDEQRRQFKKVVKEEDDAIVDRKLQIRLKHRRQKRKSKQREMSTPMLLTENHIQKPSFVDNLSPAVNEGTSDDGKIVSDSGKDACVLMEADKIKVFDASHHVDKEKLTSTGGLSDDIEQRGIKRVNSGELDADNKKCRIVVIDSNNEAEVTENKLDCNTQEVKEDLCNNGGASLPSECLDEKFWCTVCDKVALEVHPHPFLKVITCGDCNCLLKEKTHKKDQGQDCSEGYCTWCGGSSELVCCKLCKILFCTKCLKKNIGVELVPGVEDTSWHCCCCHPNLLQKLSLQLAKAVGAADLIVSSSGSDSDSSDDSDNSDDSDDSDAKVNVTISSKRRHKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSFEMSSDGCNGNLSESASVEVLGDAVAGYIVNVVREKGEEAVRIPPSISAKLKAHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTVLIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRAELLAKWRSKGGVFLIGYAAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLIDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSYSDENSDYNVLAGEKMRYGNDLLQRKDDNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKQGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFELGDDDNPETLADLSQENEHQDNPILVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPRWIANFHEHESLLQENEEEKLSKEEQDMAWEVYQKSLEWEEVQRVPLGESIMPEQKPEMPNAMPQNVSESCSILPTKLSRRFTTRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02121 1486 Gene3D - 696 978 IPR038718 -
Gma20g02121 1486 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1132 1300 IPR001650 -
Gma20g02121 1486 ProSiteProfiles ADD domain profile. 468 600 IPR025766 -
Gma20g02121 1486 MobiDBLite consensus disorder prediction 1 42 - -
Gma20g02121 1486 Pfam SNF2-related domain 746 1047 IPR000330 GO:0005524|GO:0140658
Gma20g02121 1486 SMART helicmild6 1155 1252 IPR001650 -
Gma20g02121 1486 MobiDBLite consensus disorder prediction 596 622 - -
Gma20g02121 1486 Gene3D - 1001 1076 - -
Gma20g02121 1486 CDD SF2_C_SNF 1120 1263 - -
Gma20g02121 1486 Coils Coil 107 127 - -
Gma20g02121 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 984 1317 IPR027417 -
Gma20g02121 1486 Gene3D - 982 1095 IPR027417 -
Gma20g02121 1486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 746 929 IPR014001 -
Gma20g02121 1486 PANTHER RAD54-LIKE 26 1484 - -
Gma20g02121 1486 PANTHER RAD54-LIKE 26 1484 IPR044574 GO:0016887
Gma20g02121 1486 CDD ADDz_ATRX 480 574 - -
Gma20g02121 1486 Gene3D - 1109 1343 IPR027417 -
Gma20g02121 1486 Coils Coil 49 76 - -
Gma20g02121 1486 Pfam Helicase conserved C-terminal domain 1128 1252 IPR001650 -
Gma20g02121 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 978 IPR027417 -
Gma20g02121 1486 SMART ultradead3 720 941 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02121 Gma-Chr20 48445060 48489507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02121 754 1305 RAD5 or RAD16-like Gene Family AT5G43530 25.512 1.35e-31 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma20g02121 SNF2_N 4.6e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02121 K10779 - gmx:100818409 2855.86