Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02108 ATGTCCACCGCAGCGCAGCCCAAGGCCAAGAAAACGGCGTCGTCCAAGAAGCCCCTCTCCCATCCTACCTTCGCCGTGATGATAGCGGAGGCGATAGCGAGTCTGAAGGAGAGAACCGGTTCGAGCCAATACGCGATAACCAAATTCATCGAAGGCAAGCACAAGGAGTTGCCTCCAACCTACAAGAAGCTTGTTCTCGTTCATCTCAAGAAGTCTGTTGCTGCTGGCAAGCTCGTTAAGGTCAAAAACTCTTTCAAGCTCGCACCGACTAAGTCTGCTCCTGTTAAAGCCGCTGCTGCTCCCAAGAAGCCCACCAAAGCTGCGGCTAAGCCCGCCGCCAAGCCCGCTTCCAAGCCCAAAGCTGCTGCACCTAAGAAGAAGGCTGTTGCCAAGCCCAAGGCCAAAGCTGCGGCCACCAAGCCCAAGGCCAAGCCCGCTAAGGCCGCGCCGAAGAAGGTCGCCGCTAAGCCTGCGAAGAAGACTCCCGTAAAGGCcgtgaagaagcccaagagcgtcgtgaagaaacctaaaagcgtGAAATCTCCAGCGAAAAAGGCCAAGGCTAAGAAGTGA 573 0.5218 MSTAAQPKAKKTASSKKPLSHPTFAVMIAEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKSAPVKAAAAPKKPTKAAAKPAAKPASKPKAAAPKKKAVAKPKAKAAATKPKAKPAKAAPKKVAAKPAKKTPVKAVKKPKSVVKKPKSVKSPAKKAKAKK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02108 190 MobiDBLite consensus disorder prediction 120 190 - -
Gma20g02108 190 SUPERFAMILY "Winged helix" DNA-binding domain 17 101 IPR036390 -
Gma20g02108 190 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma20g02108 190 Gene3D - 16 93 IPR036388 -
Gma20g02108 190 CDD H15 20 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma20g02108 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma20g02108 190 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma20g02108 190 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma20g02108 190 PRINTS Histone H5 signature 114 128 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma20g02108 190 PRINTS Histone H5 signature 152 169 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma20g02108 190 PRINTS Histone H5 signature 174 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma20g02108 190 MobiDBLite consensus disorder prediction 90 190 - -
Gma20g02108 190 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma20g02108 190 PANTHER HISTONE H1 2 190 - -
Gma20g02108 190 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02108 Gma-Chr20 48293587 48294621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02108 22 87 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 6.67e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02108 K11275 - gmx:100810590 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02108 20 48293587 48294621 Gma20g02108 20 48293587 48294621 ECH
Gma10g01608 10 43142957 43144001 Gma20g02108 20 48293587 48294621 GST