Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02097 ATGGCAGGTAATAGTGGTTCAGAGGGGTTGGGCGATGATTTCTTCGAACAGATCTTAGCAGTGCCTGAAGCCGGCACAGTGGGAATGTTGCAATTGGGGTCCACAACTGGTGCTTTCAGAGGAGCTTCTGGGTTAATGCCTCTGGGCTTGAATTTGGAACAAGCTGCCTTCCTAAGACACCAAGTTAACGTTGACGACGACGTTGTTCATGTTAATGTTGATGATGCCACCATCCACCAACATCACCTCACTCTCCATAACAACAACAACTCCTCATCACCCTCTTCCACTGCACCAATCACCGATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTGCATACTCCTATCCGCCCCACGCTGCCATTGCCTCCACCACCTCGTCAGCCACAACTCCACCTCCACCATCATAACCAACAGTTTCAGGGCCAGGCAGCTGCAGCTCCAGCGTCAATGGCTGCTATGCCACAACCACCTGGGATCCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCTACAGATCCTCACAGTATTGCTGAGCGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCGGCGATGCTTGATGAAATTGTGGACTATGTGAAGTTCCTTAGGCTTCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGTGGAGCTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGGGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAACAGGTGGCTAAGCTTATGGAAGAAGATGTGGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCCATACCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCAACAGGCATCAAGCCTGAATCTAACAGTCACTGA 999 0.5035 MAGNSGSEGLGDDFFEQILAVPEAGTVGMLQLGSTTGAFRGASGLMPLGLNLEQAAFLRHQVNVDDDVVHVNVDDATIHQHHLTLHNNNNSSSPSSTAPITDRDSMHMRGLFSAFGQLHTPIRPTLPLPPPPRQPQLHLHHHNQQFQGQAAAAPASMAAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGDQDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPIPLASAIFRMPQSEASTGIKPESNSH 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02097 332 Gene3D - 171 233 IPR036638 GO:0046983
Gma20g02097 332 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 8 319 - -
Gma20g02097 332 SMART finulus 182 231 IPR011598 GO:0046983
Gma20g02097 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Gma20g02097 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 319 - -
Gma20g02097 332 Pfam Helix-loop-helix DNA-binding domain 181 225 IPR011598 GO:0046983
Gma20g02097 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 235 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02097 Gma-Chr20 48220089 48225271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02097 146 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.581 3.67e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma20g02097 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02097 - - gmx:100807570 520.39