Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02091 atggagcagtatgaaatacttgagcaaattggaaaaggtgcttttggttcagcgcttctagtgagacataagcatgaaaagaaaaaatatgtgttgaagaagattcgccttgctcgtcaaactgagcgctctcgtagatctgcacacctggagATGGAGCTTATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGGTTGTTATGTCTGCATCATTATAGGTTATTGTGAGGGAGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCCTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGACTACTTGCACATGAACCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTCCTAACAAAAGATCATGACATACGTCTCGCAGGTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCGCATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGCTCGTTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGAGCTTCAGAGCTGCTTGGGCACCCACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATTAACAGCCCCAGACGAAGCACATTGCCAGTTCACTGGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGGTGCCAGAAGATGATCCTGTTTCCATCTATAGGGATAAGCGACATTCTTTCACCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGTTCTACTCTGGAGATAGATTGTACTCCTGACCATTTGAATCAAAGGTTAGCAGAACTACGTATTGGAGATAGCCATCAAGTGAAGTCAATCCAGAAGCCTGTTGTTTCCAGAACTTCTAGCATTGTTAAGACTCCAAAATTCGCTTCCTCAAAGGTCTCAGCCACCAACAAGAAATCAATGAAATCCTCAAAGAATTGTAAGACGCTTCCTCTTTCACAAAATACCACAAAATCTGCTAATACTAATCGCAGAGCATCATTCCCACTGCCAACAAGGGGTGGTAATCGGCAGCCTCCTTGCAGGTCCGTCAGTTTGCTTAGTCACGTGTCTTCACCAGATATCTCAGTCAATTCTCCACGGATTGATAAGATGGCTGAATTCCCATTAACTTCATATGAAGATTCTTTGTTCCCTATCAATAAAACATCATCCTCTGCACGAGGTTCCTCAGGCTTCCCATCTCATAGCAACCATTCAACTGTGATAGACAAATGCACGGTAGAGGTATATGGTAGAGCCTCTAACAAGCCTGGTAGTATGGATGCGTGGCAGGGAATCAAGCAGAGCGTGTTAAAGGAGATTGATGAGGATAAAAGTGGTTCCTCAGATCAAAATGCAACTGCAGGTGCTTCAAGCCACACCTCTTCTGACTTGCGCCGTCGACAATTTGACCCGTCATCATTCCAACAAAGAGCTGAAGCTTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCAAGGAAAGGTAGCAAAGTTGAGTGCAAATGCAAAGATGCTTTTAGTAGAAAGTCAATGAATCATACCTTGAATACGCAATGGCCATATTATGGGTACGGACTAGAGATGCTGCATTGCCTCGATGTAGTACAGATATATGAACATGAACACGGAAGGGGGAACAAACTCAGACCAACAAACAGGATCTAA 1926 0.3899 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLAGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPRASELLGHPHLQPYVLKVHLKINSPRRSTLPVHWPESNYMKKTRFLVPEDDPVSIYRDKRHSFTNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELRIGDSHQVKSIQKPVVSRTSSIVKTPKFASSKVSATNKKSMKSSKNCKTLPLSQNTTKSANTNRRASFPLPTRGGNRQPPCRSVSLLSHVSSPDISVNSPRIDKMAEFPLTSYEDSLFPINKTSSSARGSSGFPSHSNHSTVIDKCTVEVYGRASNKPGSMDAWQGIKQSVLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARKGSKVECKCKDAFSRKSMNHTLNTQWPYYGYGLEMLHCLDVVQIYEHEHGRGNKLRPTNRI 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02091 641 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02091 641 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gma20g02091 641 MobiDBLite consensus disorder prediction 382 418 - -
Gma20g02091 641 Pfam Protein kinase domain 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02091 641 CDD STKc_Nek 3 259 - -
Gma20g02091 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma20g02091 641 PANTHER SERINE/THREONINE-KINASE NEK4 1 580 - -
Gma20g02091 641 SUPERFAMILY Protein kinase-like (PK-like) 1 304 IPR011009 -
Gma20g02091 641 MobiDBLite consensus disorder prediction 531 546 - -
Gma20g02091 641 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Gma20g02091 641 MobiDBLite consensus disorder prediction 382 429 - -
Gma20g02091 641 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 580 - -
Gma20g02091 641 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02091 641 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gma20g02091 641 MobiDBLite consensus disorder prediction 525 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02091 Gma-Chr20 48162819 48169258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02091 10 260 MAP Kinase Kinase Kinase AT1G53570 32.422 3.48e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma20g02091 Pkinase 6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02091 K08857 - gmx:100804898 1135.17