Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02090 ATGGTGATTGACGGTAGTTTCAGCCTTCATTCTTCGCTTCGGAGGTTCCTCAATCGGTGCCCGAAGCTCCAGTGTTTTCCGCAGTTTCAGTCTCTAGAACTGAGGGGAGACTTGGTGACAGAAGAGGAAGCAGTTAATGTGTTAGAAGGGGTGTTTCGATCTGCACCCCACTTATACAATTCCGTTGATGGGGTTGGTAAAAGTAATTCGTTATATTCAAAGCTTTCAAGAATTGGAAACTACGCTTGGGTTGAATTGGGCACTGCTATGGATGTGCCACATAGTGATGATTTATTTGGCATTGACCCATTTTATATCAATAAAGACCTAAAGACCTTTGCCAGTGCATCTCTTGATTGCACCATAAAGATTTGGAATCTTGACTCTCCTCATCCCAACCTTATTGGTTCTGATGATCTCACTGCCAAGGTATGGGATTATCAAACCAAAAGTTGTGTCCATACTCTAGAAGGTCACGCGTACAATGCATCTGCTGTCTGCTTTCATCCTGAACTGCCTATAATCATTACTGGCCATAAGGATGGCACAGAGCGCATTTGGCATTCAACAACTTACGGGAAAGAAGAGGTAAAGAAGAGAGAAGTGGTAACACAAAACACAAACACAAACATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCTCTACCTCTTCACTTACCTTTCCCTCTCCATACTTCAGGAGGAACCCCCAATACGACCACCTTCCCCTCCAATTTTGATCCCTATAACCATCCCCATCAATTGCCACTCCAACCCAACAATCTCTTGCACCCATTACACCACAAAGATGAAGACAAGGAAGAAAACACCACCGTCCCGATGAACTTGGAAATCCAAAGGGATCAAAGGCAACAACTTCCCGAGCTGATTGATCCCTGGAATAACGATGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAacaacattaattacggcaagaataataataataataataatagtagcaatTATCGGTTTCTTAGTGAGCTTGAACAGCTTTATCACCAAGGGGGTAGTGGTGATCATCATCTTGAAAATACGACTCAGCCACCACTGCAGAAACAAGACAAGATGGGCCACCATGCATTGGAGTTGGAAGTAGAAGGGGATTCTAGAAACGTTGTTGACGCATTGGTGACAAAACAAAACGAGCAAAGCGACGAGGCACTAGCAGTGGAAAAGATCACAAAGGACCGCAAGAGGAAGAGGCCTGATAGGTTTGAGATGTTCAAGTGTTTTTGTGAGAGCATTGTGCACAAGATAATGGCTCAGCAAGAAGAGATGCACAACAAGCTCCTTGAGGACATGATGAAGAGAGATGACGAGAAGTTCACTAGAGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATCCAAATCCTTAACAAATTCTCAGCCACTTCGTCCCCTGCAAGCCACACCCTCAAGAAGGTAAACAATGATTCAAACATAAACACACACATTACACAAAACCCTAATCCTTCACAAACAGAAAACCCTACCTTAAGTGTTGCACAAGACACATTACAAGTGATTCCTTCTACTTCTTCTACTTCAACTCCAGCTCTTCCCCAGAACCCTAGTACTTATTCTCTAAATATCCAGAATAATAATAATAATATTCCAGTAGAGACAAATTCGGTTTTGAATAAAGGGAATGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGGCACTGATAAACCTGAGGTGCACCAGTGTGAACAACAACAACAATGAGGAGAAGGAAGGGAACAACAAGGTCCCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATGTTAACAAGAAGAGGTCCCTTGACTCGAGGACTTGTCCCTACTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAACCCGTTCTGCAATCTGAAAGCCACTTGAATAGTCCACCTAATCAGAATCCCGAGCAAGTGACACCAGATCAAACAACACAAGCTCACGAGTCTTCTTCTCAGGTGGGGTCTGGTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGAATTTGGCGAGCACCGACAGCTATAG 2379 0.4334 MVIDGSFSLHSSLRRFLNRCPKLQCFPQFQSLELRGDLVTEEEAVNVLEGVFRSAPHLYNSVDGVGKSNSLYSKLSRIGNYAWVELGTAMDVPHSDDLFGIDPFYINKDLKTFASASLDCTIKIWNLDSPHPNLIGSDDLTAKVWDYQTKSCVHTLEGHAYNASAVCFHPELPIIITGHKDGTERIWHSTTYGKEEVKKREVVTQNTNTNMFDGVPDQFHQFITPRTSLPLHLPFPLHTSGGTPNTTTFPSNFDPYNHPHQLPLQPNNLLHPLHHKDEDKEENTTVPMNLEIQRDQRQQLPELIDPWNNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYGKNNNNNNNSSNYRFLSELEQLYHQGGSGDHHLENTTQPPLQKQDKMGHHALELEVEGDSRNVVDALVTKQNEQSDEALAVEKITKDRKRKRPDRFEMFKCFCESIVHKIMAQQEEMHNKLLEDMMKRDDEKFTREEAWKKQEIEKMNKELEMMAREQAIAGDRQANIIQILNKFSATSSPASHTLKKVNNDSNINTHITQNPNPSQTENPTLSVAQDTLQVIPSTSSTSTPALPQNPSTYSLNIQNNNNNIPVETNSVLNKGNEKDDVGRRWPKDEVLALINLRCTSVNNNNNEEKEGNNKVPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNQGKPVLQSESHLNSPPNQNPEQVTPDQTTQAHESSSQVGSGGGFSVQQQQVDHGEFGEHRQL 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02090 792 SUPERFAMILY WD40 repeat-like 107 191 IPR036322 GO:0005515
Gma20g02090 792 SMART WD40_4 149 188 IPR001680 GO:0005515
Gma20g02090 792 SMART WD40_4 82 126 IPR001680 GO:0005515
Gma20g02090 792 MobiDBLite consensus disorder prediction 548 577 - -
Gma20g02090 792 Pfam WD domain, G-beta repeat 151 187 IPR001680 GO:0005515
Gma20g02090 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 187 IPR001680 GO:0005515
Gma20g02090 792 MobiDBLite consensus disorder prediction 736 792 - -
Gma20g02090 792 MobiDBLite consensus disorder prediction 736 782 - -
Gma20g02090 792 CDD GT1 637 706 - -
Gma20g02090 792 ProSiteProfiles Myb-like domain profile. 638 699 IPR001005 -
Gma20g02090 792 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 223 781 - -
Gma20g02090 792 PANTHER - 223 781 - -
Gma20g02090 792 Gene3D - 94 215 IPR015943 GO:0005515
Gma20g02090 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 156 187 - -
Gma20g02090 792 Pfam Myb/SANT-like DNA-binding domain 305 387 IPR044822 -
Gma20g02090 792 Pfam Myb/SANT-like DNA-binding domain 637 727 IPR044822 -
Gma20g02090 792 Gene3D - 307 363 - -
Gma20g02090 792 Gene3D - 639 704 - -
Gma20g02090 792 ProSiteProfiles Myb-like domain profile. 306 358 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02090 Gma-Chr20 48141414 48149612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02090 211 731 Trihelix Transcription Factor Family AT5G28300 41.136 2.77e-100 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma20g02090 Myb_DNA-bind_4 6.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02090 - - gmx:100804367 1112.83