Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02084 ATGAGGATTATGATTAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTCGATCCCTCCATAAAAAAGACTGAGTGGACGAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCCACTCAATGGAGGACAATTGCTCCAATTGTTGGCCGTACCCCTTCCCAGTGTCTTGAGCGGTACGAGAAGCTCCTTGATGCTGCCTGTGTGAAGGATGAGAACTATGAGCCCGGTGATGATCCTCGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGCCCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTGGCCAACACAAAAGGAAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAGAAGAGAGAATTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGATTACAATGCAGAAATTCCATTTGAAAAAAGGCCTCCTCCAGGGTTTTTTGATGTTACAGATGAAGATAGACCAGTGGAACAGCCCCAGTTCCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGGTTGATGTTGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATATTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCCCCTCAGATTTCAGATCAGGAATTGGATGAAATTGCCAAGTTGGGTTATGCTAGTGACCTTGCAGGAAGTCAGGAACTTGCTGAAGGTAGTGGTGCAACACGGGCTCTTCTGGCTGATTATGCACAGACACCTGGCCAAGGAATGACTCCGTTGCGAACCCCTCAAAGAACACCGGCTGGTAAAGGTGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGCTGAGAGAGTCTCAAACACCATTGTTAGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTAATGGCGTCACTCCTAAGAAAAAAGAGATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGTGCAGGTCTCACTCCTAGAATTGGCATGACACCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGCACTACATATTAATGAGGACATGAATATGCATGACAGCACTAAACTTGAGCTACAGAGACAGGCTGATATGAGAAGAAGTTTGCGTTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCTGTTCCAGAAGACGCCGAAGAGCCTGAGGAGAAGATTGAAGAGGACATGTCTGATAGAATAGCTAGAGAAAAAGCGGAAGAAGAGGCAAGGCAGCAGGCATTGCTTAGAAAGCGATCAAAAGTCCTTCAACGGGAACTTCCTAGGCCTCCTACAGCATCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGACGTGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGACGAGATGATTAGACGGGAGCTTCTAAGTTTACTGGAGCATGACAATGCTAAGTATCCACTTGATGAGAAAGTGATTAAGGAGAAGAAGAAAGGAGCCAAGCGTGCTGTAAATGGGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGGCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGTCATGAAGATGAACCCCTCGATGAATTTATTGAAGCACACAGAACCTGTCTCAATGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTCTCTAGTGTTGCTGGAAACATGGAAAAGCTAACAGCTTTGCAGAATGAGTTTGAGAATGTGAGAAGCAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGATGGTTCTCACACAAGGCTATGAGATGAGAGTAAAGAAAAGCCTCTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGATGTTGCTGCAACTGAGTTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCATCACATAGGATAAACAATCTGTGGGCTGAAGTACAGAAGCAGAAGGAACTTGAGAAAACTTTGCAAAATAGGTATGGGAGTCTAATTGAAGAGCTGGAAAAGATGCAAAATGTCATGGACCAATGCAGATTACAAGCACAACAGCAAGAAGAAATTAAAGCCAACCATGCTCGTGAGTCAACTGAGACCCCTGAGACCAAGGCTGATGGAATTGATGTACAGGGTACAGCAAATTGTGAAGCTGTACCTCACTCGGTAGAGCATGGACGAGCTCTAGCAGTTGAGTCATCTGCTGATGGAACTGCTGACCAGCAAGTAGATATTGTGCATGACCAGGCTACTTCTAGTGTCAGTCATGACATGGATGTGGATTCTGATAAATTGGCAAATCCTACACCAGCTGCAGAGAATGTCGATGAAAAAGTGGAAGGTACCGGCACCGGCACCGGCAGCTATACTGACGATGGGGAGACCATGCTGGAAATGGGTGCTGCAGTGGAAGGGTGCTTTGCTTGCGATCTTGTTGGAGGTTCTTCTGTTCAAGAGAACATGGTAACTAGAATTGTGGATCTTCGGTCAGACACAGTTACAAAGCCAACCGAAGCAATGAGAGCTGCTATGGCAAGTGCTGAAGTTGATGACGATGTTCTAGGCTATGATCCAACTGCGTTTCGCTTAGAAACAGAGATGGCAAAGACAATGGGCAAGGACGCAGCTCTTTTTGTTCCATCTGGCACTATGGGGAACCTTATATCTGTACTTGTCCATTGTGATGTCAGGGGGAGTGAAGTTATTCTTGGAGACACTTGCCATATCAACATTTTTGAGAATGGAGGTATTGCAACTATTGGGGGAGTGCATCCTAGACAAGTGAAAAATAACGATGATGGAACCATGGATATTGATTTGATTGAGGCTGCTATCAGGGACCCAATGGGGGAGCTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAACTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTAGCTAAGAAGCATGGACTGAAGCTTCACATTGATGGGGCCCGTATTTTTAATGCATCAGTTGCACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGGAAAGTGACCACAAGAAAGCTAGACTTTTGGCTGATGGATTAAACGAAGTTAAAGGATTGAGAGTGGATGCCTGTTCTGTGGAGACCAATATGGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAAGAATGAGAGTTGTTCTCCATCACCAAATATCAGCAAGTGATGTGCAATACGCCTTGTCATGCTTTCAGCAAGCTGTAGCTGTTAAAGGAGTACAAAATGAAATGGGCAACTAG 3924 0.4483 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPQFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLADYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFNGVTPKKKEIQTPNPMLTPSATPGGAGLTPRIGMTPTRDGFSFSMTPKGTPLRDALHINEDMNMHDSTKLELQRQADMRRSLRSGLGSLPQPKNEYQIVMQPVPEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRTDVDKSSFVPPTSIEQADEMIRRELLSLLEHDNAKYPLDEKVIKEKKKGAKRAVNGSAVPVIEDFEEDEMKEADKLIKEEALYLCAAMGHEDEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLTALQNEFENVRSKLDDDKEKMVRLEKKVMVLTQGYEMRVKKSLWPQIEATFKQMDVAATELECFKALQKQEQLAASHRINNLWAEVQKQKELEKTLQNRYGSLIEELEKMQNVMDQCRLQAQQQEEIKANHARESTETPETKADGIDVQGTANCEAVPHSVEHGRALAVESSADGTADQQVDIVHDQATSSVSHDMDVDSDKLANPTPAAENVDEKVEGTGTGTGSYTDDGETMLEMGAAVEGCFACDLVGGSSVQENMVTRIVDLRSDTVTKPTEAMRAAMASAEVDDDVLGYDPTAFRLETEMAKTMGKDAALFVPSGTMGNLISVLVHCDVRGSEVILGDTCHINIFENGGIATIGGVHPRQVKNNDDGTMDIDLIEAAIRDPMGELFYPTTKLICLENTHANSGGRCLSVEYTDRVGELAKKHGLKLHIDGARIFNASVALGVPVDRLVQAADSVSVCLSKGIGAPVGSVIVGSKNFIAKARRLRKTLGGGMRQIGILCAAALVALQENVGKLESDHKKARLLADGLNEVKGLRVDACSVETNMVFIDIEEGTKTRAEKICKYMEERGILVMQESSSRMRVVLHHQISASDVQYALSCFQQAVAVKGVQNEMGN 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02084 1307 MobiDBLite consensus disorder prediction 113 149 - -
Gma20g02084 1307 MobiDBLite consensus disorder prediction 399 413 - -
Gma20g02084 1307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Gma20g02084 1307 Gene3D Aspartate Aminotransferase, domain 1 1202 1298 IPR015422 GO:0003824
Gma20g02084 1307 Coils Coil 167 187 - -
Gma20g02084 1307 Pfam Myb-like DNA-binding domain 10 70 - -
Gma20g02084 1307 Pfam Beta-eliminating lyase 954 1241 IPR001597 GO:0006520|GO:0016829
Gma20g02084 1307 SMART sant 58 105 IPR001005 -
Gma20g02084 1307 SMART sant 6 55 IPR001005 -
Gma20g02084 1307 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Gma20g02084 1307 PANTHER - 1 895 - -
Gma20g02084 1307 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Gma20g02084 1307 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Gma20g02084 1307 MobiDBLite consensus disorder prediction 398 421 - -
Gma20g02084 1307 Coils Coil 689 716 - -
Gma20g02084 1307 Gene3D - 5 59 - -
Gma20g02084 1307 CDD SANT 10 53 IPR001005 -
Gma20g02084 1307 MobiDBLite consensus disorder prediction 878 917 - -
Gma20g02084 1307 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Gma20g02084 1307 CDD SANT_CDC5_II 55 106 - -
Gma20g02084 1307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Gma20g02084 1307 Gene3D - 952 1201 IPR015421 GO:0003824
Gma20g02084 1307 SUPERFAMILY PLP-dependent transferases 953 1295 IPR015424 -
Gma20g02084 1307 Coils Coil 782 816 - -
Gma20g02084 1307 Gene3D - 60 114 - -
Gma20g02084 1307 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02084 Gma-Chr20 48073352 48090956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02084 1 820 MYB-Related Transcription Factor Family AT1G09770 77.549 0.0 1249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g02084 Beta_elim_lyase 3e-95 CL0061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02084 K12860 - gmx:100801352 1779.22