Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02082 ATGACGACACCACCGTCTTCCTCCTCAGCTTCGCACTCGCAATTCGCCTATTCAAACCCTTCCTCCTCCTCCTACTTCCCCGTTCCCTTTCACCTTCAGCAACCCGCAACCACTCACTACGCTGCGCCCTACGTCGCCGCCCCCTCCGTGCAAATCCCCGCTCCTCCCGTCGTCGGCCCCATTGCTCCCGCGCCGGTTCCCGGCGTGTACTCCGCCGTGCCGCAATATCAGGCACAGCAGTTATTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCTCTTGAGAATGTTAAGGCAGCGATTGCGAGCAGCGACGTGGAACACAAAACTGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAGCTTGGGAGGATCCTATCCTTGCGGAGTGGCCAGAAGATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCAAACAGAAGAATCACATTCAAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAGTGACATGCTGGAACCTGTGTAAATCAGGAATTTGTGGCAGTTATTTAGTACGTGAGGAAGGAAACTCTGAAAATGTATAA 762 0.5026 MTTPPSSSSASHSQFAYSNPSSSSYFPVPFHLQQPATTHYAAPYVAAPSVQIPAPPVVGPIAPAPVPGVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKKKAVPRKAAGQAWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNQTEESHSKETENAKERCAAQVTCWNLCKSGICGSYLVREEGNSENV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02082 253 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 212 - -
Gma20g02082 253 PANTHER RNA-BINDING PROTEIN 42-LIKE 33 212 - -
Gma20g02082 253 SUPERFAMILY RNA-binding domain, RBD 123 208 IPR035979 GO:0003676
Gma20g02082 253 SMART rrm1_1 140 213 IPR000504 GO:0003723
Gma20g02082 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 208 IPR000504 GO:0003723
Gma20g02082 253 CDD RRM_RBM42 133 207 IPR034215 -
Gma20g02082 253 MobiDBLite consensus disorder prediction 1 22 - -
Gma20g02082 253 Gene3D - 76 211 IPR012677 -
Gma20g02082 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 216 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02082 Gma-Chr20 48044840 48047831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02082 141 216 Eukaryotic Initiation Factors Gene Family AT1G71770 31.325 5.63e-07 48.5