Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02078 ATGTGGTCAGCCCTAAAGAGGAATTACGAGGTTAGCGAGGAGATTGGTCGCGGTCGTTTCGGCACCATCTTCCGCTGCTTCCACCCACTCTCCAACCAACCCTACGCCTGCAAACTCATCGACAAATCCCTCCTCCTTGACTCCACCGACCGCCACTGCCTCCAGAACGAACCCAAATTCATGTCCCTCCTCTCTCCTCACCCCAACATCCTCCAAATCTTCCATGTCTTCGAGGACGACCACTATCTCTCCATCGTAATGGACCTCTGCCAGCCCCACACGCTTTTCGACCGCATGCTCCATGCTCCCTTCTCGGAGTCCCAGGCCGCCTCCCTCATCAAGAACCTTCTCGAAGCCGTCGCCCACTGCCACCGCCTCGGCGTCGCCCACCGCGACATTAAGCCCGACAATATTCTCTTCGATTCGGCGGACAATCTTAAGCTCGCCGACTTCGGTTCGGCGGAGTGGTTCGGCGACGGGAGGAGCATGAGCGGCGTGGTGGGGACGCCGTACTACGTGGCGCCGGAGGTTCTGTTGGGGAGGGAGTACGATGAGAAGGTTGATGTGTGGAGCTGTGGGGTGATTTTGTATATAATGTTGGCGGGGATTCCCCCTTTTTACGGAGACTCTGCTGCTGAGATCTTTGAGGCTGTGGTTAGGGCTAACCTCAGGTTCCCTTCTAGAATCTTCCGGACTGTGTCCCCCGCCGCCAAGGATCTCTTGAGAAAAATGATCTCTAGGGACTCTTCTAGAAGGTTCTCCGCAGAACAAGCCTTGAGACACCCTTGGATCTTGAGTGCGGGTGACACGGCTGAACTGACTTGA 825 0.5636 MWSALKRNYEVSEEIGRGRFGTIFRCFHPLSNQPYACKLIDKSLLLDSTDRHCLQNEPKFMSLLSPHPNILQIFHVFEDDHYLSIVMDLCQPHTLFDRMLHAPFSESQAASLIKNLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLLGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAAEIFEAVVRANLRFPSRIFRTVSPAAKDLLRKMISRDSSRRFSAEQALRHPWILSAGDTAELT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02078 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02078 274 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Gma20g02078 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02078 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Gma20g02078 274 CDD STKc_CAMK 8 263 - -
Gma20g02078 274 SUPERFAMILY Protein kinase-like (PK-like) 5 266 IPR011009 -
Gma20g02078 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gma20g02078 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 273 - -
Gma20g02078 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g02078 274 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Gma20g02078 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02078 Gma-Chr20 48021377 48022663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02078 9 272 EF-hand Containing Proteins AT1G50700 39.552 3.54e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma20g02078 Pkinase 3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02078 - K08794 gmx:547707 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01636 10 43495416 43496847 Gma20g02078 20 48021377 48022663 ECH
Gma20g02078 20 48021377 48022663 Gma20g02078 20 48021377 48022663 ECH