Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02074 ATGGCGAACCGGTGGTGGACCGGGTCGGTGGGTCTGGAGAACTCTGGCGACTCAATGAAAAAACCGGATCTGGGGTTTTCCATGAACGAGAGTGCGGTGACGGGGAACCATACAGGAGAAGAAGAGGAGAAAGAGAACAGCGACGAGCCCAGAGAGGGAGCGATCGACGTCTCCACCACGCGCCGCCCTAGGGGCCGTCCACCGGGCTCCAAAAACAAGCCGAAACCGCCGATATTTGTCACCAGAGACAGCCCTAACGCGCTGCGAAGCCACGTCATGGAGATCGCCGCCGGAGCCGACATCGCCGACTGCGTGGCGCAGTTCGCTCGGAGGCTCCAGCGCGGCGTCTCCATTCTCAGCGGCAGTGGCACCGTCGTCAACGTCACTATCCGCCAGCCCACGGCGCCAGGCGCCGTCATGGCGCTCCACGGCCGGTTTGATATCCTCTCCCTCACAGGCTCCTTTCTCCCCGGACCGTCCCCTCCCGGCGCCACCGGGCTCACCATCTACCTCGCCGGAGGCCAGGGGCATGTCGTCGGCGGCGGGGTGGTGGGCCCGCTCTTGGCGGCGGCTCCCGTTTTGTTAATGGCGGCTACGTTTTCCAATGCTACGTACGAAAGATTGCCTCTAGAGGATGATGATCAGGAACACGGCGGCGGCGGAGGCTCTCCGCCGGGAATTACCGGCGGTCCCGGCGAGGCCTCGTCGTCGATTTCGGTTTATAACAATAACGTTCCTCCTAATTTAGGTCTTTCGAATGGGCAACATCTGAACCATGAAGCTTATTCTTCTTCTCCTTGGGTTCATTCTCCTCATGCCAGACCTCCTTTCTAA 834 0.6091 MANRWWTGSVGLENSGDSMKKPDLGFSMNESAVTGNHTGEEEEKENSDEPREGAIDVSTTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEIAAGADIADCVAQFARRLQRGVSILSGSGTVVNVTIRQPTAPGAVMALHGRFDILSLTGSFLPGPSPPGATGLTIYLAGGQGHVVGGGVVGPLLAAAPVLLMAATFSNATYERLPLEDDDQEHGGGGGSPPGITGGPGEASSSISVYNNNVPPNLGLSNGQHLNHEAYSSSPWVHSPHARPPF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02074 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 202 IPR005175 -
Gma20g02074 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 270 IPR014476 GO:0003680
Gma20g02074 277 ProSiteProfiles PPC domain profile profile. 85 225 IPR005175 -
Gma20g02074 277 MobiDBLite consensus disorder prediction 230 265 - -
Gma20g02074 277 CDD DUF296 89 172 IPR005175 -
Gma20g02074 277 MobiDBLite consensus disorder prediction 1 85 - -
Gma20g02074 277 MobiDBLite consensus disorder prediction 211 277 - -
Gma20g02074 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 11 270 - -
Gma20g02074 277 MobiDBLite consensus disorder prediction 36 59 - -
Gma20g02074 277 Gene3D - 88 216 - -
Gma20g02074 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02074 Gma-Chr20 47981268 47982576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02074 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.545 5.28e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02074 - - gmx:100797639 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01641 10 43544943 43546356 Gma20g02074 20 47981268 47982576 ECH
Gma20g02074 20 47981268 47982576 Gma20g02074 20 47981268 47982576 ECH