Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02061 ATGAATTGCTTCCCTTGTTGTGGCCCTAAAAAAAGCAATAGCAAGAGGGAGCATGGTTCTCCACCCCCAGAACTTGTTACAGCAAAAGCACAAGATATGAAGAAACAAAAAGCAGACGAACAAAACCAAGCTGGCACTGCCAATATTCAGGCACAGGCTTTCAGTTTCCGTGAGCTAGCAACTGCAACAAAGAATTTCCGTCAGGAATGCCTACTTGACGAAGGAGGTTTCGGCAGAATCTACAGAGGGATAATTCCTGCCACCGGCCAGCTTGTGGCCGTGAAGCAACTCGACCGAAATGGGATGCAAAGCAGTAATGAGTTTCTGGCTGAGGTTGCTGAGCTAAGTCTCTTGCACCATGAAAATCTGGTCAATCTCATTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGgaggaagcagaagctcgtcctttgatcagtgacgttgtaaacgctctcagctttctATCCGCGCCTCCTCCTCCTGCTGCTCCTGTCCCTAAAAAGAGTGATGTTGCTGAAAGCGAAAGGGAAAGCGAGAGTGAGAGTGGAAGCGAAGCAATATCTAGCAAGGGAAGCCGCAGATCATCGGTGGATGAAAGCCAACATGATTCTGATAGCCATCTTCCACCAGCGGTTTCCTCAAAACCAAGCCGCAAAAGCAGCACCAGATCAAGTAAGGGAGCACTCAGTTCAGAATCAGGAGATGAAGTTAGCGTTTCTTCCAGCAGCAAGAGCAGTAGGAAATCGCACGttttgagccataagagtagcaTGGCATCGGATGATGGAAGCATTTCCTCATCAAGCTGCCGTAGCAGCAGTGTGGGATCAGAGCGTAGCAGCATGAGGCTATCACAAGGGAGTTTTCACTCAGACCCATCATATAGCAGCAAAAGGAAAGAGGATGAGAGCATGCATTTATTAGACCGTGCAAGCAGCTTGCGATCTGATGAGGATAGTGGTCACCCTTTTGACCAAACTAGCAGCAGTGGATCAAGTGTTTATTCGAGATAA 1020 0.4422 MNCFPCCGPKKSNSKREHGSPPPELVTAKAQDMKKQKADEQNQAGTANIQAQAFSFRELATATKNFRQECLLDEGGFGRIYRGIIPATGQLVAVKQLDRNGMQSSNEFLAEVAELSLLHHENLVNLIGYCADGDQRLLEEAEARPLISDVVNALSFLSAPPPPAAPVPKKSDVAESERESESESGSEAISSKGSRRSSVDESQHDSDSHLPPAVSSKPSRKSSTRSSKGALSSESGDEVSVSSSSKSSRKSHVLSHKSSMASDDGSISSSSCRSSSVGSERSSMRLSQGSFHSDPSYSSKRKEDESMHLLDRASSLRSDEDSGHPFDQTSSSGSSVYSR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02061 339 MobiDBLite consensus disorder prediction 208 295 - -
Gma20g02061 339 Gene3D Phosphorylase Kinase; domain 1 26 139 - -
Gma20g02061 339 PANTHER RECEPTOR-LIKE KINASE LIP1 139 258 - -
Gma20g02061 339 MobiDBLite consensus disorder prediction 171 185 - -
Gma20g02061 339 Pfam Protein tyrosine and serine/threonine kinase 71 135 IPR001245 GO:0004672|GO:0006468
Gma20g02061 339 MobiDBLite consensus disorder prediction 158 339 - -
Gma20g02061 339 SUPERFAMILY Protein kinase-like (PK-like) 47 158 IPR011009 -
Gma20g02061 339 PANTHER OS07G0668900 PROTEIN 1 138 - -
Gma20g02061 339 PANTHER OS07G0668900 PROTEIN 139 258 - -
Gma20g02061 339 MobiDBLite consensus disorder prediction 296 324 - -
Gma20g02061 339 MobiDBLite consensus disorder prediction 325 339 - -
Gma20g02061 339 MobiDBLite consensus disorder prediction 1 44 - -
Gma20g02061 339 PANTHER RECEPTOR-LIKE KINASE LIP1 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02061 Gma-Chr20 47840816 47844280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02061 1 138 Glycoside Hydrolase AT3G07070 53.846 9.73e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gma20g02061 PK_Tyr_Ser-Thr 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02061 - - gmx:100804526 277.33