Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02050 ATGGAGACCAACAACAACCTCAACCTCATCGTCCCTAATCCTCAAGATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGATCTTATCCGGAGCGTCCAGGGGAGCCAGATTGCTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAATCATCCTCCTAACAGGAGGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGGCACGTACTAGAACGTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATACGATGCTCTCATTACGGGGTTCTCCTGTTTACCCTACCGTCCATTCTCCAACTACGCCAGGTCAGGAGTCATATGCTGGAGGAATTACAAATTGGTCAAGAGGATCATACATTCCTAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGGGCCCTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCAGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGAAACTTCTCATCAAGGTGAGCTAGCAAATGCAGGATCACAAGGGGCATATTCTCAATTCCGTTCTGGCACTGTTCCAGTAGGGTTTTATACACTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAACCTGAATGCCAATTCTACGTGAAGACAGGAGATTGTAAGTTTGGAGCAGTCTGTCAGTTCCACCACCCGCGAGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCTTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGAAATTTTCTCTTACAATATCACCACATCACCTTCAGCTGATGCCCCAAGCAGGCATTTGTTAGGATCTTCATCTGGAACTGCTGCATTGAATTTATCTTCCGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGGCCGCTTTCATTATCAGAGATAAGACAGATTCCTTCTGGTGATGATAACATTGATGATGATGTAGCTTGA 1287 0.4545 METNNNLNLIVPNPQDSLWMMNLRTGETMDSGSYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRRLAIATARMIGEFPERIGQPECQARTRTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNTMLSLRGSPVYPTVHSPTTPGQESYAGGITNWSRGSYIPSPRWQGPSSYGPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQAMRNGQTYETSHQGELANAGSQGAYSQFRSGTVPVGFYTLQRENIFPERPGQPECQFYVKTGDCKFGAVCQFHHPRERLIPAPDCVLSPIGLPLRLGEPLCVFYSRYGICKFGPSCKFDHPMEIFSYNITTSPSADAPSRHLLGSSSGTAALNLSSEGLVESSSAKPRPLSLSEIRQIPSGDDNIDDDVA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02050 428 Gene3D - 111 161 - -
Gma20g02050 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 107 IPR000571 GO:0046872
Gma20g02050 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 289 314 IPR000571 GO:0046872
Gma20g02050 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 153 IPR000571 GO:0046872
Gma20g02050 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 64 IPR000571 GO:0046872
Gma20g02050 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 360 IPR000571 GO:0046872
Gma20g02050 428 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Gma20g02050 428 SUPERFAMILY CCCH zinc finger 336 361 IPR036855 GO:0046872
Gma20g02050 428 MobiDBLite consensus disorder prediction 397 428 - -
Gma20g02050 428 SMART c3hfinal6 287 314 IPR000571 GO:0046872
Gma20g02050 428 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Gma20g02050 428 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Gma20g02050 428 SMART c3hfinal6 82 107 IPR000571 GO:0046872
Gma20g02050 428 SMART c3hfinal6 126 153 IPR000571 GO:0046872
Gma20g02050 428 ProSiteProfiles Zinc finger C3H1-type profile. 126 154 IPR000571 GO:0046872
Gma20g02050 428 Gene3D - 36 110 - -
Gma20g02050 428 ProSiteProfiles Zinc finger C3H1-type profile. 82 108 IPR000571 GO:0046872
Gma20g02050 428 ProSiteProfiles Zinc finger C3H1-type profile. 287 315 IPR000571 GO:0046872
Gma20g02050 428 PANTHER PROTEIN PHOSPHATASE RELATED 12 425 - -
Gma20g02050 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 12 425 - -
Gma20g02050 428 Gene3D - 279 363 - -
Gma20g02050 428 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Gma20g02050 428 SUPERFAMILY CCCH zinc finger 129 154 IPR036855 GO:0046872
Gma20g02050 428 SUPERFAMILY CCCH zinc finger 42 65 IPR036855 GO:0046872
Gma20g02050 428 SUPERFAMILY CCCH zinc finger 291 317 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02050 Gma-Chr20 47770988 47775289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02050 18 427 C2H2 Transcription Factor Family AT3G02830 58.273 2.99e-166 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma20g02050 zf-CCCH 6.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02050 - - gmx:100790771 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02050 20 47770988 47775289 Gma20g02050 20 47770988 47775289 ECH