Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02023 ATGGCAACTCGAAGATATGAGTTTGGAAGGATGAATGAGGCTAGCCACCCAGACTCCATCAGAGCTGCCTTGGTTGAATTCCTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTTTGCGACAAATTTACAAGGAACCAGGGTCATCAGCGGGTGAGTTAGTGGTAATTGCACTAGCTCATGCCTTTGCTCTATTTGCTGCTATTTCTGCTAGCATGCACGTGTCTGGTGGACACGTCAACCCTGCCGTCACCTTTGGTGCTCTTCTTGGTGGAAGGATCTCCGTCCTTAGAGCCCTTTACTATTGGGTGGCTCAACTTCTCGGTTCTATAGTGGCTGCTCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCACAGGGGTTCAGTGTATCAATCGGGCTTGGAGCGTTCCACGGTCTTATACTTGAGATTGCTCTGACGTTTGGTCTGATGTACACAGTGTATGCTACTGCTATTGATCCTAAAAGGGGCAGCATCGGCTCAATTGCACCCTTAGCCATTGCATTCGTTGTTGGGGCAAACATCCTCGCTGGTGGGCCGTTTGATGGGGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCCATGGTGGGTTGGAGATGGCACTACCACTGGATCTTCTGGGTGGGCCCATTGATTGGGGCAGCCCTCGCAGCACTCCTGTATGAATACGTTATGGTCCCAATTGAGCCTCCTCATCATCAACCTTTAGCTGGTGTAGATTACTAG 765 0.5072 MATRRYEFGRMNEASHPDSIRAALVEFLSTCIFVFAGEGSALALRQIYKEPGSSAGELVVIALAHAFALFAAISASMHVSGGHVNPAVTFGALLGGRISVLRALYYWVAQLLGSIVAALLLRLVTNNMRPQGFSVSIGLGAFHGLILEIALTFGLMYTVYATAIDPKRGSIGSIAPLAIAFVVGANILAGGPFDGACMNPARAFGPAMVGWRWHYHWIFWVGPLIGAALAALLYEYVMVPIEPPHHQPLAGVDY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02023 254 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gma20g02023 254 Gene3D Glycerol uptake facilitator protein. 5 242 IPR023271 -
Gma20g02023 254 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 254 - -
Gma20g02023 254 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 SUPERFAMILY Aquaporin-like 12 245 IPR023271 -
Gma20g02023 254 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 TIGRFAM MIP: MIP family channel proteins 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma20g02023 254 PANTHER AQUAPORIN-8 1 254 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02023 Gma-Chr20 47471822 47473539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02023 2 254 Major Intrinsic Protein MIP AT1G73190 67.045 9.69e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02023 K09873 - gmx:100797632 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02023 20 47471822 47473539 Gma20g02023 20 47471822 47473539 ECH