Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02007 ATGGCTTCCAGGCGTTTGAGGGCATTCAAGCGGTGGATGAAGTCGAAGGGGTTCGAATGGAGCGATGCACTGGAGTTTGTGGACACCCCAGAAGAAGGAGTTGAGGTGAGAGCATTGTGCCAGTTGAAGGAAGGTGATGTTGTGGCCAAGATGCCAAAGGAAGCTTGCCTCACCACAAAGACCAGTGGGGCACGTAAGATCATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTTGCATTTGCTATCATGTATGAGAGAAGCTTGGATGGGGACTCTCCTTTTGCTGGCTACCTTCAACTCTTGCCTCACCAAGAGTGTGTGCCAATTGTTTGGACCCTCGATGAAGTAAACGAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGACAAGGCTCTGATTTATGATGACTGGAAAGAGAATATTCTACCCCTATTGGATTTAGCACCTTTAAAACTAAATCCAAAGTTCTTTGGCATAGAACAATACTTTGCAGCAAAAAGTCTTATATCTTCACGATCTTTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCCGAGGATGTGCATTTCACTGCTATGTCCTGTAATGATGAGTCTGATACTGATGTTGATGAGGGCATTGTCAAGGAAGAAACATTGGCTCAAAATTCCTCTATAGATATGACCGTGTTAAATAATGGGAACTGCAATGTTAGTGACTCGGATAGTTCTTCAGTTAGTGATGGTGATACTTCTATGCTGGAGATGATTATGATAAAAGATGTCAGCAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACTGAGCAAGATAATTCCTATGATATTGTAAACATAGATATGGAACTGGTACTTCAATGGTGTACTTCTGTGTTTTCTGACCGCCACAGTAGAGCAAGAGTTTCCCTTTGGAGAAAGTTAGGCTATTCTGCATGTGGCAGCCAAAACTCTGAATATTTTGAGATCTCATTTGATGGAGAACCACAGATTGAACTCCTCGTTTTATTACACATCATGTTATTACCAGATAATGCCTACCATAAGTTAGACCTATCGGTATCGGTTGCTGGAAATTGTGATGAATCAAGTGGAACCACCTTTCTGAATGGTAATATCTTTCCTAGTAAAGCATTTAATATGAGCAAGAAATCCTTGCTGCCTAAAAAAGCTTGTGATGTCCTGTTGTCACTTGCTGATATGAGGGAGAGTCTCTATGGCTTGAAATCAATTGAAGATGATATTGAGGCATTGGGAAGGTGTAGTTTAGTTAGAGAGAGAAAGCTGTATCATTCTTTGATGCTGCGCATCAATGAAAGGAAGATCCTCCAGAGGCTCAGAAATTATGCTTCTCAGCCATTTAAAAATAAAATCACTAACCATAGTTCTCCGAGGAAGAAGTTGAAAAGAACAACAAAGAAAACGAGTTGA 1512 0.4114 MASRRLRAFKRWMKSKGFEWSDALEFVDTPEEGVEVRALCQLKEGDVVAKMPKEACLTTKTSGARKIIEEAGLDGHLGLAFAIMYERSLDGDSPFAGYLQLLPHQECVPIVWTLDEVNELLCGTELHQTVQEDKALIYDDWKENILPLLDLAPLKLNPKFFGIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTAMSCNDESDTDVDEGIVKEETLAQNSSIDMTVLNNGNCNVSDSDSSSVSDGDTSMLEMIMIKDVSSGTEVFNTYGLLGNAALLHRYGFTEQDNSYDIVNIDMELVLQWCTSVFSDRHSRARVSLWRKLGYSACGSQNSEYFEISFDGEPQIELLVLLHIMLLPDNAYHKLDLSVSVAGNCDESSGTTFLNGNIFPSKAFNMSKKSLLPKKACDVLLSLADMRESLYGLKSIEDDIEALGRCSLVRERKLYHSLMLRINERKILQRLRNYASQPFKNKITNHSSPRKKLKRTTKKTS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02007 503 ProSiteProfiles SET domain profile. 22 282 IPR001214 GO:0005515
Gma20g02007 503 MobiDBLite consensus disorder prediction 482 503 - -
Gma20g02007 503 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 6 484 - -
Gma20g02007 503 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 484 - -
Gma20g02007 503 PIRSF RMS1_SET 1 480 IPR011383 GO:0016279|GO:0018026
Gma20g02007 503 SUPERFAMILY SET domain 3 301 IPR046341 -
Gma20g02007 503 CDD SET_LSMT 23 296 - -
Gma20g02007 503 Pfam SET domain 33 282 IPR001214 GO:0005515
Gma20g02007 503 Gene3D - 298 489 IPR036464 -
Gma20g02007 503 MobiDBLite consensus disorder prediction 487 503 - -
Gma20g02007 503 Gene3D set domain protein methyltransferase, domain 1 2 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02007 Gma-Chr20 47318722 47323182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02007 2 502 NAC Transcription Factor Family AT3G56570 54.393 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma20g02007 SET 3.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02007 K05302 - gmx:100794971 937.176