Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02005 ATGGAGTCTAGCAATTTTCATGCTGACAAAATGGAAGATAAAAAGATAATTATAAGATACAAGGAATGTCTGAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGCTGTGGTGAGTTCATGGCTGCTGGAGAAGAAGGCACCCTTGAAGCTCTCAAGTGCTCAGCTTGCAATTGCCACAGAAACTTTCACAGAAAAGAGATAGAGTCTTCTGATTCTAATGCCATTCCTTTGATGATTATTCCTGACACTACTCAGATAATAAGACCAATTTTGGCTCATTTATCTCCAAACAAAAGTGGCTCAATTAGTCCTTCTGATTTGTCTGATGAGAAGGAAAACGAAGATGGGATGATGATTAAGGAGGTGGAAAATCCAAATGAGAAGGTGaagaagagAAAACCGCCGGAGATCGAAAATTTACCTTAG 435 0.3931 MESSNFHADKMEDKKIIIRYKECLKNHAAAIGGNATDGCGEFMAAGEEGTLEALKCSACNCHRNFHRKEIESSDSNAIPLMIIPDTTQIIRPILAHLSPNKSGSISPSDLSDEKENEDGMMIKEVENPNEKVKKRKPPEIENLP 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02005 144 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Gma20g02005 144 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Gma20g02005 144 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 11 135 - -
Gma20g02005 144 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Gma20g02005 144 MobiDBLite consensus disorder prediction 108 144 - -
Gma20g02005 144 MobiDBLite consensus disorder prediction 97 144 - -
Gma20g02005 144 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02005 Gma-Chr20 47307037 47309968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02005 14 71 ZF-HD Transcription Factor Family AT1G14440 81.034 5.62e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma20g02005 ZF-HD_dimer 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02005 - - gmx:100793926 270.781