Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02003 ATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCATGCAACCATGTGACCACCACTGATGACGTCGAAGACTGGGTGTACCACCAATTAGAAAACACAACTCATCTTTTACATGGAGTAGTCCATGCCAATGGATATGGGCACCTTCTTCGGGTTAATGGAAGAGAAGGGGGCTCTAGATTTCTTTCTGGTATTCATATTATGGATTTCTGGGATCGTCTATGCAAGACTCTTGGACTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGGATAGAGTATCGCATGCTCCATGCCATTATGAAGGGACATCCGTGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTTACTCATGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCAGCTTTTCCCACGGACGGATGCCCAACTCTCGTGTGGAGGACATGATTAAATATTACCAGTCTTTGTCAGAGCACGAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCACAAGACTGCATCTAATGTTGATGAGACAACCTGCAAGAAGCGTTGTTTTAATGCTTCTGGACTGTCAATGTCATGGGATAAGAGTGGCATTGAACGTGTGGAGCAAGCCATGATCAGAGTGCTGCGTGCAGTGTCTGAGTCCAAGTGGGTGAGCTGGCGTGCTCTTAGGGGTGCAGCCTCCAAGTTGGGCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCAATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGGCTGCAACTGGTGCTTGCTATGGAATTTTAGCAAAGAATAATTCTCTGGGCTCGAAGTATCCATCTGAAGAAAACCTGCTACAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGAAGCAGGGACAAGGACTCTTGCAATGAACTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAATCCTGAGATGTGGCCATTGTCAGATTCGCAGATGTTTCGCCTCTCATGTCATGTTGAACTTGTAGATGAATTTGAAGATTCAGAAGCTATAACTCCACCAGAATTAGTTGTGCTGCCCCTGAATGCCACGGTGGCTGAGCTTAAGAATCAAGCAGCAAATGCTTTTCAAGATGTATATCTAAGGTTCAGAAGACTTCAAGTTGATGGGCTACATGGTTATAGCGGTGTCGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAGAGATGTAGTTTGTGTCCGAGGAAGATGCATCGGGAAGAATGGGTTGAGCAAATTCCGAATGGAAAGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGCGGGGCCAAGGACGATGATGGAGAGAGAATGTTGGCGTGTGATATATGTGGAGTGTGGCGACACACCAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCTCGTTTTGTTTGCCTGAAATGCCAAAACTGTGAATCAAAACTCAAATGTAGTGGGCACTGCAAAGATGAGACCGTGACTAACGTTAGTGGTAGTAGTTGCTTCAGAAACGGCTTGCCAGTGCCATCTGATGTTATTTGA 1701 0.4462 MCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGIHIMDFWDRLCKTLGLRKVSVMDVSKKYGIEYRMLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKSAVESLSNLPLSSFSHGRMPNSRVEDMIKYYQSLSEHELVNIRDLFCFIMGLIGDAHKTASNVDETTCKKRCFNASGLSMSWDKSGIERVEQAMIRVLRAVSESKWVSWRALRGAASKLGSPELLDYCLGELGGKMVYGGMVVNSQCNPQTGVYEFRLEAATGACYGILAKNNSLGSKYPSEENLLQCLRYLYDSLLHPQMMVNYEAGTRTLAMNSAQKLFDCKQFVKDYNPEMWPLSDSQMFRLSCHVELVDEFEDSEAITPPELVVLPLNATVAELKNQAANAFQDVYLRFRRLQVDGLHGYSGVDDSTQVKLLLGSRDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNCESKLKCSGHCKDETVTNVSGSSCFRNGLPVPSDVI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02003 566 SUPERFAMILY FYVE/PHD zinc finger 472 530 IPR011011 -
Gma20g02003 566 CDD PHD_MMD1_like 483 528 - -
Gma20g02003 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 535 IPR013083 -
Gma20g02003 566 PANTHER OS01G0877500 PROTEIN 1 540 - -
Gma20g02003 566 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 540 - -
Gma20g02003 566 Pfam PHD-finger 484 531 IPR019787 -
Gma20g02003 566 ProSitePatterns Uncharacterized protein family UPF0054 signature. 42 52 IPR020549 -
Gma20g02003 566 SMART PHD_3 483 529 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02003 Gma-Chr20 47290134 47293575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02003 32 528 PHD Transcription Factor Family AT5G22260 30.639 3.67e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma20g02003 PHD 4.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02003 - - gmx:100793400 1178.7