Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01971 ATGGAACCGCCATCGCAGCAACAGCCTCCGCAACCGCAACCGCCACCGCGCACTGCCACCATCCTCGGAAAGTACCAGCTGACGCGCTTCCTCGGCCGTGGCAGCTTCGCCAAGGTCTACCAGGGGCGATCCCTCGTCGACGGTGCCGCCGTGGCCATGAAAATCATCGACAAATCGAAAACCGTTGACGCCGGCATGGAGCCACGCATAATCCGCGAGATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCAAAATCCACGAGGTGCTCGCCACCAAAACCAAGATCCACCTCGTCGTGGAGCTCGCCGCCGGCGGCGAGCTCTTCGCCAAAATCTCCCGCCGCGGAAAGCTTCCGGAGTCCACCGCGCGCCGCTACTTCCAGCAGCTCGTCTCGGCGCTCCGGTTCTGCCACCGCAACGGCGTGGCGCACCGCGACCTGAAGCCGCAGAATCTCCTCCTCGACGGCGACGGCAACCTCAAGGTCTCCGACTTCGGGCTCTCCGCGCTGCCGGAGCAGCTCAAGAACGGCCTCCTCCACACTGCCTGCGGCACGCCGGCGTACACCGCGCCGGAGATCCTCCGCCAGAGCGGCGGCTACGACGGGTCCAAGGCCGACGCTTGGTCCTGCGGCCTCATCCTCTACGTCTTCCTCGCCGGACACCTCCCATTCGAAGACACCAACATTCCCGCCATGTGTAAAAAAATTTCCCGGCGAGATTATAAGTTCCCGGAGTGGATTTCAAAACCAGCCCGTTTTGTAATCCATAAATTACTCGACCCGAACCCGGAAACCCGAATTAGCCTGGAGGCCCTGTTTGGGAATGCGTGGTTTAAAAAATCACTAAAACCGGAAACGGCGGAAGAAAACGCGTTGGGGTTCAGTTACGTGAAGAGTAGTTATAATTACGAAGGGAGTAAAAGTTCGGGTGTGACAGCGTTTGACATAATATCGATGTCTTGGGGTTTGGATTTAACGAGGTTGTTCGAAACGAAGTGGGATTCGGGGAGTAAAAGAGAGAAGAGGTTCACTTCGAGTGCGAGAGTTGAGGTGGTGGAGGAGAAGGTGAAGGAAGTGGGAGGGCTGTTGGGGTTTAAGGTTGAGGTTGGGAAGAGCAACGGTGCAATTGCGTTGCTCAAAGGGAAAGTGGCTTTGGTTTTTGAGCTCCTTGAGATTGTGCCTCATCAACTTCTTTTAGTGGCGGTTAAGGTGCTGGAGGGTGCTTTGGAGTTTGAGGAACTTCATTGGGGGGATTGGAAACATGCCTTGCAAGATCTCGTGCTCTCTTGGCACAACCAAGAATCATGA 1317 0.5687 MEPPSQQQPPQPQPPPRTATILGKYQLTRFLGRGSFAKVYQGRSLVDGAAVAMKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILKIHEVLATKTKIHLVVELAAGGELFAKISRRGKLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGDGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILRQSGGYDGSKADAWSCGLILYVFLAGHLPFEDTNIPAMCKKISRRDYKFPEWISKPARFVIHKLLDPNPETRISLEALFGNAWFKKSLKPETAEENALGFSYVKSSYNYEGSKSSGVTAFDIISMSWGLDLTRLFETKWDSGSKREKRFTSSARVEVVEEKVKEVGGLLGFKVEVGKSNGAIALLKGKVALVFELLEIVPHQLLLVAVKVLEGALEFEELHWGDWKHALQDLVLSWHNQES 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01971 438 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 436 - -
Gma20g01971 438 Pfam Protein kinase domain 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01971 438 Pfam NAF domain 315 371 IPR004041 GO:0007165
Gma20g01971 438 Gene3D Transferase(Phosphotransferase) domain 1 17 315 - -
Gma20g01971 438 SMART serkin_6 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01971 438 PANTHER SERINE/THREONINE KINASE 16 436 - -
Gma20g01971 438 Gene3D Kinase associated domain 1, KA1 316 431 - -
Gma20g01971 438 SUPERFAMILY Protein kinase-like (PK-like) 21 293 IPR011009 -
Gma20g01971 438 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Gma20g01971 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Gma20g01971 438 ProSiteProfiles Protein kinase domain profile. 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01971 438 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Gma20g01971 438 CDD CIPK_C 315 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01971 Gma-Chr20 46989052 46990570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01971 8 435 CBL-interacting serine-threonine protein kinases AT4G14580 58.199 2.70e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gma20g01971 Pkinase 1.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01971 K12761 - gmx:100811834 842.802