Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01967 ATGGAAAACACTACTGTGACATATCAAACTGATCTCAACCTCAAGGCAACAGAGCTTAGACTGGGGCTTCCAGGAACAGAAGAAAGTGAGGAGAAAACACTGTCTGCAGGTGCTAGAATTAACAACAAAAGACCTTTAACTGAAACCTCTGATGAGTGTGCTTCAAATGGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTTCAGGAGAGTGAGGGTGCTGGAATTTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTCAGAAAGATTGACTTGAAGGTCTATGGAGGCTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAGGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGCAAGGGGTTTGGGTTGTGCTGTATGA 585 0.4376 MENTTVTYQTDLNLKATELRLGLPGTEESEEKTLSAGARINNKRPLTETSDECASNGTSSAPHEKTETAPPAKTKIVGWPPIRSYRKNSLQESEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKSLENMFKLTIGEHSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCRRLRIMKGSEARGLGCAV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01967 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 191 IPR003311 GO:0005634|GO:0006355
Gma20g01967 194 MobiDBLite consensus disorder prediction 22 75 - -
Gma20g01967 194 SUPERFAMILY CAD & PB1 domains 88 183 - -
Gma20g01967 194 Pfam AUX/IAA family 54 191 IPR033389 -
Gma20g01967 194 PANTHER AUXIN-INDUCED PROTEIN 11 191 - -
Gma20g01967 194 ProSiteProfiles PB1 domain profile. 97 184 IPR000270 GO:0005515
Gma20g01967 194 Gene3D - 91 194 - -
Gma20g01967 194 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01967 Gma-Chr20 46943257 46944901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01967 100 190 B3 DNA Binding Superfamily AT2G46530 36.264 2.35e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma20g01967 AUX_IAA 2.5e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01967 K14484 - gmx:100527777 397.897