Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01966 ATGGCAACTATGCTGACAAAGGAGCATGGTCTGAACCTCAAGGAGACCGAGCTTTGCCTCGGTTTGCCTGGTGGGGGAggcggcggcggcggcggcggcggcggcggcggTGGTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAACTTAATCTTCATTCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGATCCTGCCAAGCCACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCAGTACAAAAGGTTAGCACTGAGGATGTGGCAGAGAAGACAACAAGCAGCACTGCTAATCCTGGGGCATTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTGCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAAGCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAGGGATCAGAAGCGATTGGGCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 744 0.4624 MATMLTKEHGLNLKETELCLGLPGGGGGGGGGGGGGGGEVETPRATGKRGFSETVDLKLNLHSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSTEDVAEKTTSSTANPGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01966 247 MobiDBLite consensus disorder prediction 21 51 - -
Gma20g01966 247 SUPERFAMILY CAD & PB1 domains 120 228 - -
Gma20g01966 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 6 240 - -
Gma20g01966 247 Pfam AUX/IAA family 45 238 IPR033389 -
Gma20g01966 247 Gene3D - 123 241 - -
Gma20g01966 247 ProSiteProfiles PB1 domain profile. 129 229 IPR000270 GO:0005515
Gma20g01966 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 240 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01966 Gma-Chr20 46899375 46901569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01966 113 237 B3 DNA Binding Superfamily AT4G23980 32.000 2.60e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma20g01966 AUX_IAA 2e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01966 K14484 - gmx:100810762 471.47