Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01964 ATGACAATTGGAGCGGCGAAGCTCAACTATGAGAAGGTCTCAGCATGCGTGGCATGTCCTTTGTGCAATAAGTTTTTCAGAAACGCCACTACAATATCAGAATGCTGTCATAGTTTTTGCAGGGAATGCATAGACAAGAAGTTAATAGATGAGAAATTAAAGCATTGTCCAATATGCAATAGAGACTTGGGTTGTTCTCCACTTGATAAATTAAGGTCAGATCCTTGTCTGCAAGATTTGAGGGATAAAATTTTCCCATTTGAAGAACAAAATGCTTCAGTCAAATTGAACATCTACAGAAAGAAGAATTCTCTATCTTCGTTAAAAAAGAATGCAAAAATAGACAAAGCAGCTTCAAAACCTGATAAAGCGGAAGATGAAAACCGTGGTGAAGTAGAAGTTCTGGAAGAAGCTTCTAGTTCTACAATAGGATCCGCGAGAAGAGCCAAAGCTGCAGCTAGATTAAAATTTACTTGCTCTGCACCACCTGCTGCTTGTCAACTTGACAAAGTAGCAGGAGAAGATAAGAAAGATGGTGGTCATCCCCGGGGTGGTGAAACTTCCAACGGAAGTCTCAAAATCAAAATTCCGGTAAAGAGGGACAATTCTGAGTTTAGGAATGAAACGGCTGATATGTTAGAGCCATTAAATTCCCTGGTGGAACCTGGAAGCAAAAAGTCTCGTAAAAAGTCCACCATGCGCTCCAATGACAATGCCGCTGATCAAAATGAATCAACTCCttcaaactcagattcagtccaacaccaaaggcctctgagcaatcAAGAGAAAACACTCAGAATCTCTGAGGACTTAAATTTTCCTGCACAACCTGAGATTGGTtccaacattgaaggcaacaaagaatttggtccaatctggttctgcttggttgctgcagaagagaagaaagcaagtgcacgactgccacagctatattccagctacctaagggtcaaGGATGGTAGTGTAACTGTTTCCTATATTAAAAAGTATCTGGTGAAGAAGCTTGGTCTTGCTAGTGAAGATGAGGTGGAGATCACATTACAAGGTCGAGCACTTTTGTCTTCATTGCAACTGAGAAACCTAGTAGACATGTGGTTGCACACAGTGCCAAAGAATAAGATTCAGACATTTGTTGGAAGCTCAGCCAAGGATTTTATTATGGCACTTTCATATGGTCGAAAGACTTGA 1194 0.3484 MTIGAAKLNYEKVSACVACPLCNKFFRNATTISECCHSFCRECIDKKLIDEKLKHCPICNRDLGCSPLDKLRSDPCLQDLRDKIFPFEEQNASVKLNIYRKKNSLSSLKKNAKIDKAASKPDKAEDENRGEVEVLEEASSSTIGSARRAKAAARLKFTCSAPPAACQLDKVAGEDKKDGGHPRGGETSNGSLKIKIPVKRDNSEFRNETADMLEPLNSLVEPGSKKSRKKSTMRSNDNAADQNESTPSNSDSVQHQRPLSNQEKTLRISEDLNFPAQPEIGSNIEGNKEFGPIWFCLVAAEEKKASARLPQLYSSYLRVKDGSVTVSYIKKYLVKKLGLASEDEVEITLQGRALLSSLQLRNLVDMWLHTVPKNKIQTFVGSSAKDFIMALSYGRKT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01964 397 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Gma20g01964 397 SUPERFAMILY RING/U-box 14 78 - -
Gma20g01964 397 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 396 IPR044807 GO:0004842
Gma20g01964 397 MobiDBLite consensus disorder prediction 173 271 - -
Gma20g01964 397 MobiDBLite consensus disorder prediction 236 268 - -
Gma20g01964 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 134 IPR013083 -
Gma20g01964 397 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Gma20g01964 397 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Gma20g01964 397 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 5 396 - -
Gma20g01964 397 Gene3D - 283 375 - -
Gma20g01964 397 MobiDBLite consensus disorder prediction 113 146 - -
Gma20g01964 397 MobiDBLite consensus disorder prediction 113 134 - -
Gma20g01964 397 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01964 Gma-Chr20 46880123 46883364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01964 5 320 C3H Transcription Factor Family AT2G30580 29.444 6.09e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01964 K16277 - gmx:102669950 600.897