Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01949 ATGGATAGGTGCTGGTTTAATAAGTTCAAGCCAAAGGATAAAACACCATCTTCAAAAAACAAGGAAACAGGCATTGCAAAAGGGTCAAAACCCCCAACAAATGATGAAGCACCTTCCAATGTGACCAAACAGAAGGTTGCAGCTGCAAAGCAGTACATAGAAAACCACTATAAGAAACAGATGCAGGACTTGCAGGAGAGAAAGGAACGACGTAATATGCTAGAAAAAAAGTTGGCTGATGCTGAAGTTTCTGAGGAAGAGCAGAACAATTTGCTTAAATATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTCAGAGTCTGCCGAGAGAAAGCAACCGGTCATGTATATGCTATGAAGAAACTTAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTAAAAGCTGAGAGGAATCTACTTGCAGAAGTTGATAGCAATTGCATTGTAAAGCTTTATTATTCCTTTCAAGATGAAGAGTACTTATATCTCATAATGGAGTATCTACCTGGTGGTGATATGATGACGTTGCTCATGCGGAAGGATATACTGACAGAAAATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTATTGGAAGCAACAGAAGTGGAGCCCTTCAGAGCGATGGGCGTCCTGTGGCTCCTAAAAGAAGCCAACAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTAGCCTATTCTACAGTCGGAACACCTGACTATATTGCCCCCGAAGTTCTTCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCCCTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAAATTATTTAAAATTTCCAGAAGAAGTTAAAATTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCGCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTCAACTTTGTTGGTTACACATATAAGAACTATGAAATCGTGAATGATGATCAACTACCTGAAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAGCGACCATCTATTAAGACCCTATTTGATGATGAATCAGCTACAGCTGCCAATCAACCTACCCAAGGGAGCTTCTTAAAACTGTTACCTACTCAACCAGAAGTTCCTGAGAAGAGTGAATCTCAATGA 1632 0.4026 MDRCWFNKFKPKDKTPSSKNKETGIAKGSKPPTNDEAPSNVTKQKVAAAKQYIENHYKKQMQDLQERKERRNMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLKRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTENEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSIGSNRSGALQSDGRPVAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEVKISAEAKDLISRLLCNVDQRLGTKGADEIKAHPWFKGIEWDKLYQIKAAFIPEVNDELDTQNFEKFEEADNQTQPSSKSGPWRKMLSSKDVNFVGYTYKNYEIVNDDQLPEIAELKKKSTKPKRPSIKTLFDDESATAANQPTQGSFLKLLPTQPEVPEKSESQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01949 543 MobiDBLite consensus disorder prediction 512 529 - -
Gma20g01949 543 SMART pkinase_C_6 415 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gma20g01949 543 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Gma20g01949 543 Pfam Protein kinase domain 117 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01949 543 Coils Coil 57 91 - -
Gma20g01949 543 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 38 517 - -
Gma20g01949 543 MobiDBLite consensus disorder prediction 1 20 - -
Gma20g01949 543 MobiDBLite consensus disorder prediction 277 298 - -
Gma20g01949 543 Gene3D Phosphorylase Kinase; domain 1 433 443 - -
Gma20g01949 543 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 487 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gma20g01949 543 CDD STKc_NDR_like 113 478 - -
Gma20g01949 543 Gene3D Phosphorylase Kinase; domain 1 86 198 - -
Gma20g01949 543 Gene3D Transferase(Phosphotransferase) domain 1 313 432 - -
Gma20g01949 543 Pfam Protein kinase C terminal domain 433 477 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gma20g01949 543 SUPERFAMILY Protein kinase-like (PK-like) 89 466 IPR011009 -
Gma20g01949 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 517 - -
Gma20g01949 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Gma20g01949 543 Gene3D Transferase(Phosphotransferase) domain 1 199 277 - -
Gma20g01949 543 SMART serkin_6 115 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01949 543 MobiDBLite consensus disorder prediction 511 543 - -
Gma20g01949 543 ProSiteProfiles Protein kinase domain profile. 115 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01949 543 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01949 Gma-Chr20 46770860 46779632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01949 25 541 AGC Kinase Gene Family AT3G23310 83.815 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gma20g01949 Pkinase 6.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01949 K08790 - gmx:100805439 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01949 20 46770860 46779632 Gma20g01949 20 46770860 46779632 ECH