Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01948 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGGAGTGGATCGTTTGGAGAGCTTTACTTAGGTGTTAATGTGCAAAGTGGGGAGGAAGTGGCTGTGAAGCTGGAATCTGTGAAGACCAAGCACCCACAGCTTCACTATGAATCAAAACTATATATGCTTCTTCAAGGGGGAACTGGTATACCCCATCTAAAATGGTTCGGAGTTGAGGGTGACTACAATGTCATGGTTATTGATCTCCTTGGGCCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGAAAATTATCCCTGAAAACAGTTCTGATGCTGGCAGATCAGCTAATAAACAGAGTTGAATACATGCACTCCCGGGGTTTTCTGCATCGCGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATAATTGATTATGGCCTGGCAAAAAAGTATCGGGATCTTCAAACTCATAAGCATATACCATACAGGGAAAACAAAAATCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACTCATTTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCTCTCGGATATTTGCTCATGTATTTTTTGAGAGGAAGTCTCCCATGGCAAGGCTTGAGAGCTGGCACTAAAAAGCAAAAATATGACAAGATAAGTGAGAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCATATCCATTGGAGTTTACATCATACTTCCACTACTGCCGAACGTTGCGGTTTGAAGATAAGCCTGATTATTCTTATCTTAAGAGACTATTTCGGGACCTATTCATCCGAGAAGGTTATCAGTTTGATTATGTATTTGATTGGACTATGCTGAagtatcctcaaattggatccagttctagaGCCCGACCAAGTGGGAAACCAGTCATAAACCCCGGACAATCAGGAGAGAGAATAGAACGGCCTTCAGGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACTTGTTCTGCAAAGTGAGCATTCTAGGCATAGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGGCCTCGCAGCTCTTCTCGTAATGGCAGTTCTTCAAAAAAGCCTGTCTTGTCAAGCAGCCGGCCAAGCTCTTCTGGTGAGCCAAGTGAAAGCCGTACTAGCCGACTGGTCTTAAGCAGTGGCCGACTATCAACAACTCAGAGACTTCAACCTGGTTTTGAATCCAAAACATCTTTATCTCGGGCTTCGGCAACAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCACTTGGTTCAGGAAAAAGGAAATGA 1371 0.426 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYLLMYFLRGSLPWQGLRAGTKKQKYDKISEKKMLTPIEVLCKSYPLEFTSYFHYCRTLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSRARPSGKPVINPGQSGERIERPSGGFSGAVEAFARRNGSGLVLQSEHSRHRSSDDVPSSKDVQADSERPRSSSRNGSSSKKPVLSSSRPSSSGEPSESRTSRLVLSSGRLSTTQRLQPGFESKTSLSRASATRGGRDDTLRSFELLSLGSGKRK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01948 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01948 456 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gma20g01948 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gma20g01948 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gma20g01948 456 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 443 - -
Gma20g01948 456 MobiDBLite consensus disorder prediction 299 326 - -
Gma20g01948 456 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01948 456 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01948 456 Gene3D Transferase(Phosphotransferase) domain 1 1 320 - -
Gma20g01948 456 MobiDBLite consensus disorder prediction 371 434 - -
Gma20g01948 456 MobiDBLite consensus disorder prediction 349 370 - -
Gma20g01948 456 PANTHER CASEIN KINASE-RELATED 1 443 - -
Gma20g01948 456 CDD STKc_CK1_delta_epsilon 8 282 - -
Gma20g01948 456 MobiDBLite consensus disorder prediction 344 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01948 Gma-Chr20 46762646 46768587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01948 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 1.37e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gma20g01948 Pkinase 5.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01948 K08960 - gmx:100804897 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01948 20 46762646 46768587 Gma20g01948 20 46762646 46768587 ECH