Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01944 ATGCCCATGAATATCAGCAATTTTTTTAACAATAGCTATCAGCCGAGTTTTTTCAACTCTGGACAAGACCCTCGGCAAAACAGCCAAAATGGTTTTAGATGTAGATTGTGCAACCATGTTTTCCCTAGCTACCAAGCACTCAAAGCCCATTTTGAGTCTCATTTTACTCTAGAAAACCCTGCCATTAGAAATCTTTATTCATCAAGCCATGTCAACTCTCAAAGAGGAATGATTCCCAACCCTTTGCGGCCCAATTTTCCTAGGCCAATGGTGATGCAGGAAACAAGAAACTTTGTTAACATGAATTTCCAGGCACCACCCCAACAACCTATGGTGATGCCTCAATCTAGAGCAAACCTATTTCCTCTTGTTATCCAACATAATGTTGCTGCTTCACAATCACTTCAAGGTCCACCACAGGCTACACAATTTGTCAATAATTATGTTGAAACGGCTCATTTGCTTGCTCCACCAATCCACCAAGGGGAGATGGAGGTTTCTCCTATTGATGGAACTAAGCCATATATCGATCTACTGGATAAACCCATCGACAACAATTGA 561 0.4135 MPMNISNFFNNSYQPSFFNSGQDPRQNSQNGFRCRLCNHVFPSYQALKAHFESHFTLENPAIRNLYSSSHVNSQRGMIPNPLRPNFPRPMVMQETRNFVNMNFQAPPQQPMVMPQSRANLFPLVIQHNVAASQSLQGPPQATQFVNNYVETAHLLAPPIHQGEMEVSPIDGTKPYIDLLDKPIDNN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01944 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 54 IPR013087 -
Gma20g01944 186 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gma20g01944 186 SUPERFAMILY beta-beta-alpha zinc fingers 19 54 IPR036236 -
Gma20g01944 186 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01944 Gma-Chr20 46714888 46715448 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g01944 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01944 - - pvu:PHAVU_007G056300g 187.193