Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01929 ATGGAGAAGATAATGAAGGATAAGAAAAAACAATGCTTATTGAAGAGAAAACAAGAAAATGATAGAGGGTGTGAGAATATGTTTGAAGAAGATGAACAGATACTTAGGCTTTCCTCACATTATTCAACTTTAGGAAAGTGTCGAGTGGGATGTTTCAGTATGAGAGCTAAGAGTTTGATAAAGTCACTGGCAACGAGGGACTATTCGGCAAGTGGTGGTTTATCATCTCGACCTGGTGAAATTGACACAAAGGTGGACAATACCAACATTGAAGAAGCAGAGTCCTCTCTCCGTGAAAGTGGTTACTTGAACTATGAGGAAGCCAGAGCATTGCTTGGAAGACTTGAGTATCAGAAAGGCAATATCGAAGCTGGACTTCATGTGTTTGAAGGAATAGatacgcaggacgcttgggcctcagAATATGCTGAACAGAGGAAGTTAAGCATTGCGTTTGATCATGAAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTTAGTGGATATATTCTACTAGCACGGATTTTATCAGCTCAACAAAAGTTTGTAGATGCAGAGCTTGTTATAGATGCTGCTCTAGACCAAAGTGGGAAATGGGATCAAGATGAATTGTTGAGAACTAAAGCTAAACTACGGATTGCACAGGGAAAATTAAAGAATGCAGTTGAGACACATACTCTTGCAGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACAGCAAGTAATGTTGTGAAGAATAAGGGAAACCGTGACAGAAGTCTGGAAATGGATATATGGCTTGATTTAGCCAATGTGTACCCAGCCTTATCGAAGTGGCAAGATGCTGAAGTTTGTCTTGTAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAAGGTTTACTTTTTGAAGCCAGAGGTCTTCATCGAGAAGCTTTGAAATCATATAGGAAAGGATTGGATATTGAGCCCAACCATGTGCCAAGTTTGATATCCACAGCCTGTGTACTCAGACAACTTGGTGATCAATCATCTTCAATTGTTAGAAGCCTTCTCACCGATGCACTACGCCTTGACAGAACAAACCCTCCTGCTTGGTACAATCCTGGACTGCTCTACAAAGCTAATTTGGGGACATCAGCAATGGAAACTGTTGAATGCTTTGAAGCAGCAGCTTTTCTTGAAGAATCTTCTTCCATTGAACTCTTTAGATAA 1209 0.3912 MEKIMKDKKKQCLLKRKQENDRGCENMFEEDEQILRLSSHYSTLGKCRVGCFSMRAKSLIKSLATRDYSASGGLSSRPGEIDTKVDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAGLHVFEGIDTQDAWASEYAEQRKLSIAFDHEKKLIKLEGGSSVSGYILLARILSAQQKFVDAELVIDAALDQSGKWDQDELLRTKAKLRIAQGKLKNAVETHTLAVLQVQNKSLGTASNVVKNKGNRDRSLEMDIWLDLANVYPALSKWQDAEVCLVKSEAINPYSASRWHTKGLLFEARGLHREALKSYRKGLDIEPNHVPSLISTACVLRQLGDQSSSIVRSLLTDALRLDRTNPPAWYNPGLLYKANLGTSAMETVECFEAAAFLEESSSIELFR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01929 402 SMART tpr_5 291 324 IPR019734 GO:0005515
Gma20g01929 402 SMART tpr_5 257 290 IPR019734 GO:0005515
Gma20g01929 402 SMART tpr_5 167 200 IPR019734 GO:0005515
Gma20g01929 402 SUPERFAMILY TPR-like 205 372 IPR011990 GO:0005515
Gma20g01929 402 Pfam Tetratricopeptide repeat 292 324 IPR019734 GO:0005515
Gma20g01929 402 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Gma20g01929 402 PANTHER PROTEIN NPG1 61 135 IPR043376 -
Gma20g01929 402 PANTHER PROTEIN NPG1 141 402 IPR043376 -
Gma20g01929 402 PANTHER OS10G0471400 PROTEIN 61 135 - -
Gma20g01929 402 PANTHER OS10G0471400 PROTEIN 141 402 - -
Gma20g01929 402 Gene3D Tetratricopeptide repeat domain 83 399 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01929 Gma-Chr20 46585073 46591499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01929 125 402 Calmodulin-binding Proteins AT4G28600 46.233 2.12e-68 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01929 K21843 - gmx:100789469 453.751