Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01904 ATGGAACGTGGGGTTCTTGATAGTATCATTAATAGGCTGCTTGAAGTCAGAGGCAGACCAGGGAAGCAGGTGCAACTTTCTGAGGCTGAGATCAAGCAGCTTTGTCTTGTCTCCAGGGATATCTTCTTGAGGCAGCCCAACCTCTTGGAACTCGAGGCACCAATTAAGATCTGTGGAGATGTCCATGGTCAATATTCCGACCTTCTGCGACTTTTTGAGTATGGTGGATTGCCTCCTCGTTCTAATTACTTGTTTCTAGGGGACTATGTTGATCGTGGGAAGCAAAGTTTGGAGACAATATGTCTCCTTCTGGCTTATAAAATAAAATATCCCAACAACTTTTTCCTTCTGAGGGGCAACCATGAATGTGCTTCTATAAACCGCATCTACGGATTTTATGATGAGTGTAAACGAAGGTACAATGTGAGGCTTTGGAAAGTGTTCACGGAATGTTTCAACTGCTTGCCAGTGGCAGCTCTAATTGATGAAAAGATACTTTGTATGCATGGTGGACTCTCTCCTGAGTTACACAATCTGAATCAGATAAAGAGTTTGCCGCGTCCTATTGAAGTGCCTGAAACTGGTCTACTATGTGACCTCCTTTGGTCTGATCCTAGTAGTGACATTCGGGGTTGGGGAGAGAATGACCGCGGAGTTTCCTATACTTTTGGTGCTGATAGGGTGACAGAATTCCTTCAGAAGCATGATCTTGATTTGATTTGCAGGGCCCATCAGGTCATGGAAGACGGATATGAATTCTTTGCTAACAGGCAACTTGTAACCATCTTCTCGGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCTATGATGACTGTTGATGAGACACTTGTTTGCTCTTTTCAAATATTGAAGCCTGTAGAAAATAAAAAGCCTAATAAGTTTGCCTTTGGGAGCACAACTACAGTTAAGCATAGTACTCCAACAAAAACCAAGTTCCAGCAATCATTTTTTGGTGCTAAAGCATGA 993 0.43 MERGVLDSIINRLLEVRGRPGKQVQLSEAEIKQLCLVSRDIFLRQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPNNFFLLRGNHECASINRIYGFYDECKRRYNVRLWKVFTECFNCLPVAALIDEKILCMHGGLSPELHNLNQIKSLPRPIEVPETGLLCDLLWSDPSSDIRGWGENDRGVSYTFGADRVTEFLQKHDLDLICRAHQVMEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDETLVCSFQILKPVENKKPNKFAFGSTTTVKHSTPTKTKFQQSFFGAKA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01904 330 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 322 - -
Gma20g01904 330 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Gma20g01904 330 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Gma20g01904 330 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Gma20g01904 330 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Gma20g01904 330 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Gma20g01904 330 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Gma20g01904 330 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Gma20g01904 330 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Gma20g01904 330 SMART pp2a_7 26 296 IPR006186 GO:0016787
Gma20g01904 330 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 322 - -
Gma20g01904 330 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Gma20g01904 330 SUPERFAMILY Metallo-dependent phosphatases 18 297 IPR029052 -
Gma20g01904 330 CDD MPP_PP1_PPKL 5 294 - -
Gma20g01904 330 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Gma20g01904 330 Gene3D - 2 305 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01904 Gma-Chr20 46352105 46356938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01904 33 239 Calmodulin-binding Proteins AT5G63870 30.364 2.08e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01904 K06269 - gmx:100791655 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01812 10 45351052 45368047 Gma20g01904 20 46352105 46356938 GST