Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01903 ATGGATTCACCTTCCTCCTTCTTCAACTCACCCTCTTCCGATTTCTCCTCCGAATCTTCCTCTCCGGAAGCGTTCTCGTGGGAAGGGTACCTTCCCTTCAACGAGAACGACCCGGAGGAGATGCTTTTGTACGGCATGATTGCCGGCGCCACCACCGTGGATCACTCCTTCGAGAGGACGAGCTCGGAGGAGAGTGAGGCGGCCCGGAAGAAGAAGTCGTACAGAGGTGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGCGTCACGGGATGAGGGTGTGGCTGGGAACATTCGACAGCGCCGAAGCCGCGGCTCTGGCTTACGACCAAGCGGCGTTCTCCATGCGCGGTTCGGCGGCGATTCTCAACTTCCCCGTGGAGATAGTAAGAGAGTCGCTTAAGGAGATGAACTATGCAAATGATTCCAACAACGAAGAAGGGTGCTCCCCTGTTGTGGCTCTGAAGAGGAAACACTCCTTGAGAAGGAAAATTAGCGTCAAGAAGAACAACAACAGCAAACTACAAAGTAGTACCGTAGACAATGCTGTCGTGTTTGAAGACCTTGGTCCTGATTACTTGGAACAGTTGCTGATGTCCTCTGATCATCATATTCCCACCACCTTCTGA 645 0.5442 MDSPSSFFNSPSSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMIAGATTVDHSFERTSSEESEAARKKKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVEIVRESLKEMNYANDSNNEEGCSPVVALKRKHSLRRKISVKKNNNSKLQSSTVDNAVVFEDLGPDYLEQLLMSSDHHIPTTF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01903 214 MobiDBLite consensus disorder prediction 1 24 - -
Gma20g01903 214 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Gma20g01903 214 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Gma20g01903 214 SUPERFAMILY DNA-binding domain 73 133 IPR016177 GO:0003677
Gma20g01903 214 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Gma20g01903 214 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Gma20g01903 214 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Gma20g01903 214 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Gma20g01903 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 26 205 - -
Gma20g01903 214 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Gma20g01903 214 PANTHER DNA-BINDING DOMAIN 26 205 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01903 Gma-Chr20 46326479 46327439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01903 31 208 AP2-EREBP Transcription Factor Family AT3G23240 61.749 1.54e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma20g01903 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01903 K14516 - gmx:100790598 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01813 10 45377097 45378077 Gma20g01903 20 46326479 46327439 GST