Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01890 ATGACTTGTTCTCTCTTATGCTACATAGTCTTCGAAGAAGGTAGCATACACCTCACAGCAACTGTGGCAAATCCTTGGTGGACGGGTCAGGGAGGGTTATCTGGGGTTGACCACCCAGGAACCCATTCACCTGGCCTAGGCAAACGCCCCTCAGACCTTGGAATCAGCGAAAACAGTGGTGGGCACAATAGAGAAGAAGATGAAGACAATAGAGATGAACCAAAAGAGGGTGCAGTTGAGGTTGGAACCCGCAGACCAAGAGGAAGACCTCCTGGATCCAAAAACAAGCCAAAACCACCCATTTTCGTGACAAGGGACAGCCCAAATACCCTGAGGAGCCACGTGATGGAGGTAACTGGAGGAGCTGATGTTGCAGAAAGTGTAGCCCAATTCGCAAGGAGGCGTCAGCGTGGGGTTTGTGTGCTCAGCGGGAGTGGCTCAGTGGCCAATGTTACTCTTAGACAGCCTTCTGCTCCTGGTGCTGTGGTGGCACTTCATGGAAGGTTCGAGATTCTGTCCCTAACCGGGACTTTCCTACCTGGTCCTGCTCCTCCAGGATCCACAGGACTCACCGTGTATCTGACGGGAGGACAGGGCCAGATAGTGGGAGGGAGTGTGGTTGGATCTCTAGTTGCAGCAGGACCAGTGATGGTCATTGCTGCAACTTTTGCTAATGCAACATATGAGAGACTTCCACTTGATGAGGATGATGAGGGGCCCAGTTCAGCGGCGGGGGCGCAAGGTGGAGGATCGTCGCCACCCCCACCGCTTGGAATTGGAAGCAGTGGGGGTGGACAGTTGCAGGGTGGGATGCCAGATCCATCATCTATGCCTTTGTATAATCTTCCACCAAATGGAGGAGTGGGGCAGGTAGGGCATGAAGCTCTTGCTTGGGCTCATGGACGAGCACCTTTCTGA 918 0.5359 MTCSLLCYIVFEEGSIHLTATVANPWWTGQGGLSGVDHPGTHSPGLGKRPSDLGISENSGGHNREEDEDNRDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNTLRSHVMEVTGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLTGGQGQIVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDEGPSSAAGAQGGGSSPPPPLGIGSSGGGQLQGGMPDPSSMPLYNLPPNGGVGQVGHEALAWAHGRAPF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01890 305 MobiDBLite consensus disorder prediction 59 83 - -
Gma20g01890 305 CDD DUF296 112 223 IPR005175 -
Gma20g01890 305 PANTHER DNA-BINDING PROTEIN-LIKE 43 305 - -
Gma20g01890 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Gma20g01890 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 305 IPR014476 GO:0003680
Gma20g01890 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 236 - -
Gma20g01890 305 ProSiteProfiles PPC domain profile profile. 108 245 IPR005175 -
Gma20g01890 305 Gene3D - 111 238 - -
Gma20g01890 305 MobiDBLite consensus disorder prediction 33 109 - -
Gma20g01890 305 MobiDBLite consensus disorder prediction 232 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01890 Gma-Chr20 46205544 46207460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01890 22 305 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.606 5.09e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01890 - - gmx:100798994 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01828 10 45535912 45537131 Gma20g01890 20 46205544 46207460 GST