Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01880 ATGGATTCGGATCAAGGCAAGCTTTTCATCGGTGGGATTTCATGGGATACGACGGAGGACAAGCTCAAGGAGCATTTCGGTAACTACGGCGACGTTTTGAGCACTTCCGTCATGCGGGAGAAGAACACTGGGAAGCCAAGGGGCTTTGGTTTCGTCGTTTTTGCGGATCCTAACATTCTAGATAGGGTTTTGGAAGACAAACATGTCATAGACGGCAGAACGGTTGATGCCAAAAAGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCCAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGAAAATGGAGGAAACATCAGGACTAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGACTGAAGAAAAATTTCGTCTGTACTTTGAGTCTTATGGACATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGGCGTCCACGGGGATTTGGGTTTATTTCATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGATGggtggtgctggaggtggtggtgctggaattggtggGTATCAAGGTTATGGGGCATCTGGTGGCAGCCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGCGCTGCAGGTGGATTCCCTCCTTACGGTTCTTCTGCCTATAGTGCTCCTGGGTATGGTTATGGTCCGGCTAATAATGGCATTGGTTATGGTGCATATGGAAGTTATGGTAGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCAACATATGGGAATCCTAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCTGGTGGCCCAAGAAGTTCATGGCCTGCTCAGGCTCCTTCTGGTTATGGATCTATGGGTTATGGGAACACTGCTGCTTGGGGTGCTCCTAGTGGTGGTGCTGGATCTGGTGGTGGCGGTCCTGGTTCAGCAACTGCAGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGCTGGATATGGTGGAAGTGATAGTTCTTATGGGAATTCAAGTGCATATGGTACTGTTGGTGGACGTACTGGGAGTGGTCCAAACAGTAATGCTAGTGCTCCTGGTGGGACTGAACTAACAAGTAGTGGTGGCAGTGGCAACTATATGGGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAACTCATGCATCTGGAAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1431 0.4654 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSENGGNIRTKKIFVGGLPPTLTEEKFRLYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGAGIGGYQGYGASGGSQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGSATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAAWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGNQGYGYGGYAGYGGSDSSYGNSSAYGTVGGRTGSGPNSNASAPGGTELTSSGGSGNYMGGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01880 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gma20g01880 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Gma20g01880 476 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Gma20g01880 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 474 - -
Gma20g01880 476 MobiDBLite consensus disorder prediction 392 476 - -
Gma20g01880 476 MobiDBLite consensus disorder prediction 392 418 - -
Gma20g01880 476 Gene3D - 102 231 IPR012677 -
Gma20g01880 476 MobiDBLite consensus disorder prediction 84 106 - -
Gma20g01880 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gma20g01880 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Gma20g01880 476 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Gma20g01880 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gma20g01880 476 Gene3D - 4 88 IPR012677 -
Gma20g01880 476 MobiDBLite consensus disorder prediction 433 455 - -
Gma20g01880 476 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Gma20g01880 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gma20g01880 476 SMART rrm1_1 113 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01880 Gma-Chr20 46084768 46087272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01880 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.500 7.19e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01880 K14411 - gmx:100786882 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01880 20 46084768 46087272 Gma20g01880 20 46084768 46087272 ECH
Gma10g01838 10 45661094 45664319 Gma20g01880 20 46084768 46087272 GST