Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01873 ATGTTGCAGGATGTTTTTGATCAGCCACTGCCACCAAAGGCCGAACCACAACAGCAACTTCCCCTTGATGAAATTTCAAGCCCTCTTAGTGCTCGAATCTTCGAACTTTGTAACACTGATTTTTTTCCAGAGGCTTTGCAGAATTCTGAGGTTACTTCCAGCTCAAACTGTTGTTACGAGGAGAACTCCTCATATGCCACAACAAATATATCTGTAACTGTAGATGTAGACAATAAGTTGAATAGCAATAGCAACACAGTCACCACCCCAACTAGCACTACCACCACCAACACCAACAACAACACAACCAACAGTAGTAACCTGTCTATTTTCTTTGACTCCCAAGAAGAGATTGACAATGACATTTCTGCCTCCATAGACTTCTCACTCTCTCCATCTTTCAATGTTCCCCCATTTCTCCCAGTCTCATCCCAGCAAGAACAGTTTGATTTCTCTTCTGTGCAGCATCAGGTCCAACTAGCAGCATGTTCGGTTGTGGAGGGCTTCACTCAGTATCCCACTGACGCTGTTGCACCTCCTTTTATGGGGGCTCCATTACCTTCTGTTTTTGAAGAGGACTGCATATCTTCAGTCCCTTCTTATATGCCTCTTAACCCCTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTCATGGCCCCCTTACTACTGCCTTATCAACTGATAGTTCTGGAATATTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGCACTTGGTACTGAGAGCCAGCAACTAGTACCCGGGGCTGGTGGTTCTGGCACTCTAACACCAGAAATCTCAAACTTAGAGGACTCCTCCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGAGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACTAGTAGCAATCATGAAGAAGATGATGAAGAAGAAGTAGTTATGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGCTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1254 0.4306 MLQDVFDQPLPPKAEPQQQLPLDEISSPLSARIFELCNTDFFPEALQNSEVTSSSNCCYEENSSYATTNISVTVDVDNKLNSNSNTVTTPTSTTTTNTNNNTTNSSNLSIFFDSQEEIDNDISASIDFSLSPSFNVPPFLPVSSQQEQFDFSSVQHQVQLAACSVVEGFTQYPTDAVAPPFMGAPLPSVFEEDCISSVPSYMPLNPSSPCTYLSPGMPPYMPHGPLTTALSTDSSGIFGGNILLGSELQTQELEYQGENGRMYCTDSIQRVFNPPDLQALGTESQQLVPGAGGSGTLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEEDDEEEVVMKDEDDMVDSSDIFAHISGLNSFKCNYSIQSWI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01873 417 MobiDBLite consensus disorder prediction 354 383 - -
Gma20g01873 417 Pfam CCT motif 319 361 IPR010402 GO:0005515
Gma20g01873 417 MobiDBLite consensus disorder prediction 1 21 - -
Gma20g01873 417 PANTHER CCT MOTIF FAMILY PROTEIN 22 417 - -
Gma20g01873 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 417 - -
Gma20g01873 417 MobiDBLite consensus disorder prediction 354 376 - -
Gma20g01873 417 ProSiteProfiles CCT domain profile. 319 361 IPR010402 GO:0005515
Gma20g01873 417 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01873 Gma-Chr20 46039352 46042830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01873 299 368 C2C2-CO-like Transcription Factor Family AT5G24930 40.000 3.29e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma20g01873 CCT 3.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01873 - - gmx:100813806 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01873 20 46039352 46042830 Gma20g01873 20 46039352 46042830 ECH
Gma10g01845 10 45708930 45712503 Gma20g01873 20 46039352 46042830 GST