Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01860 atggcaggaaacatggggtggggtgtgatagaagaggagggatggaggaagggaccttggacttctgaggaggacaaattgctcattctgtatgtcaagttccatggtgagggcagatggaactctgctgctaggcttgcagGACTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCAAGAAGGGTCAAATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGGACTCACTTCAAGAAAAAGATGAAAACTCCATCTGATGCTGCTGAGAAGGCGAGAATCCACTCCTCGAGGAgacagcattttcagcagcaacaacagcagttgaagcagcagcagcaacaattccaattcaacTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAAATGACCATAGAGTGCCTTCTATATCTCAAGAGGCACAAGAAATGGCCAGCATGTACCCAAACACTTCAGAACACCAGGGCTACTTCTACTCAATGTTCAATGTCAATGACAATGACAATAATGTCTCTGCACCTGAGTCCTCAAATGAAGAAATTCTATGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCTAGTGCCACAAGCAAAGCCAGTTTACATAATTTAGTTTCTCCTTTCTGTTAA 765 0.3098 MAGNMGWGVIEEEGWRKGPWTSEEDKLLILYVKFHGEGRWNSAARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKMKTPSDAAEKARIHSSRRQHFQQQQQQLKQQQQQFQFNLDMKGIINLLEENDHRVPSISQEAQEMASMYPNTSEHQGYFYSMFNVNDNDNNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKASLHNLVSPFC 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01860 254 MobiDBLite consensus disorder prediction 118 145 - -
Gma20g01860 254 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gma20g01860 254 CDD SANT 19 64 IPR001005 -
Gma20g01860 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gma20g01860 254 Gene3D - 17 69 - -
Gma20g01860 254 PANTHER MYB TRANSCRIPTION FACTOR 1 247 - -
Gma20g01860 254 SMART sant 69 117 IPR001005 -
Gma20g01860 254 SMART sant 16 66 IPR001005 -
Gma20g01860 254 Gene3D - 74 119 - -
Gma20g01860 254 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gma20g01860 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 247 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma20g01860 254 MobiDBLite consensus disorder prediction 118 134 - -
Gma20g01860 254 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gma20g01860 254 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gma20g01860 254 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Gma20g01860 254 CDD SANT 74 115 IPR001005 -
Gma20g01860 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01860 Gma-Chr20 45947157 45948489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01860 12 254 MYB Transcription Factor Family AT4G13480 52.107 2.26e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g01860 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01860 K09422 - gmx:100782089 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01860 20 45947157 45948489 Gma20g01860 20 45947157 45948489 ECH
Gma10g01853 10 45767708 45770804 Gma20g01860 20 45947157 45948489 GST