Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01830 ATGGCCACAGCAGAAGAAATTTCAACTTTGAAACTGTTGCGCCAATATCTCTTGGGGGATATTTCAGACCCTTTTCTCACCAATCTCATTCCAGTAAAACTTGAAGACCCCTCATCAGGACTTGATATGGGTTCAAACTTCTCAGAACAAAGCAGCTTCTGCAAGTTTCTGGAGTGCTTTGATTTTGAAGCAGAAGTGGTAGGTCTCACTTCTCATCATAAGGTCCAAAGCTCCATTGCAACAAGTCCACCCCAGAATTTCAATTTTCCAGAAGAACCAATGGTGTCAATGAAAAAGGAAGCAACATGTTATGCAACAAGGCATTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCGGCAGAGATTCGCGACCCCAAAAAGAAAGGGAGCAGGGTGTGGCTTGGCACATTTGACACTGAGATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCATAAAGCCGTGTTGAATTTCCCTCTAGAGGCTGGAATGTCTCATCCAGAGCCCAACAGCAGTGGCAGGAAAAGGAGAAGAGAGTACACAACAGCTGCCACAAGTTCAAGGCATGTTATGTCATGA 600 0.455 MATAEEISTLKLLRQYLLGDISDPFLTNLIPVKLEDPSSGLDMGSNFSEQSSFCKFLECFDFEAEVVGLTSHHKVQSSIATSPPQNFNFPEEPMVSMKKEATCYATRHYRGVRRRPWGKFAAEIRDPKKKGSRVWLGTFDTEIDAAKAYDCAAFRMRGHKAVLNFPLEAGMSHPEPNSSGRKRRREYTTAATSSRHVMS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01830 199 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Gma20g01830 199 PRINTS Ethylene responsive element binding protein signature 148 168 IPR001471 GO:0003700|GO:0006355
Gma20g01830 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 187 - -
Gma20g01830 199 SUPERFAMILY DNA-binding domain 108 168 IPR016177 GO:0003677
Gma20g01830 199 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 187 - -
Gma20g01830 199 MobiDBLite consensus disorder prediction 168 199 - -
Gma20g01830 199 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Gma20g01830 199 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Gma20g01830 199 Pfam AP2 domain 108 159 IPR001471 GO:0003700|GO:0006355
Gma20g01830 199 Gene3D AP2/ERF domain 107 168 IPR036955 GO:0003700|GO:0006355
Gma20g01830 199 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01830 Gma-Chr20 45661253 45662120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01830 106 185 AP2-EREBP Transcription Factor Family AT5G07580 75.000 7.80e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma20g01830 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01830 - - gmx:100306125 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01830 20 45661253 45662120 Gma20g01830 20 45661253 45662120 ECH
Gma10g01880 10 46020233 46020838 Gma20g01830 20 45661253 45662120 GST