Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01820 ATGAACAACAGCACCAGCAACAAGGAAGATAATGGCTTTGATCCAAGTGAGTTTACATATGGTGTAGCTTTTGTAATTGGCTTGGTCTTCTTACTTGTCACCATAGCTTTTGCATGTGTGCGTCTTCGCATGGCTCGTGGTCCTAACATGCTAAACATTTTGGCTGGTATTCCACCATCTCGCCAAGCACGATCAGAAGAAGATTCAGCTGAACAGGGGCTTCATCACATTGACACAAGTTTTGAGAGCTATCCGAAGTTGCTTTACTCTCAAGTAGAGAAGGGTTCAAGTAGTTCAAGTGTTGTTTCTTCTAGCTGCTCCATATGCTTAGGTGACTACAAAGAAAGTGACACGTTGAGGTTGCTTCCTCACTGTGACCATCTTTTCCACCTTGCTTGCGTTGATCCTTGGCTTAGGTTGCATTCAACTTGTCCCATATGTAGAAAATCATCTATTCAAGCTTCACATAGTGACTCCAATATTTAG 486 0.4259 MNNSTSNKEDNGFDPSEFTYGVAFVIGLVFLLVTIAFACVRLRMARGPNMLNILAGIPPSRQARSEEDSAEQGLHHIDTSFESYPKLLYSQVEKGSSSSSVVSSSCSICLGDYKESDTLRLLPHCDHLFHLACVDPWLRLHSTCPICRKSSIQASHSDSNI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01820 161 SMART ring_2 106 147 IPR001841 -
Gma20g01820 161 SUPERFAMILY RING/U-box 88 152 - -
Gma20g01820 161 Pfam Ring finger domain 105 148 IPR001841 -
Gma20g01820 161 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 IPR045899 -
Gma20g01820 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 152 IPR013083 -
Gma20g01820 161 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Gma20g01820 161 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 - -
Gma20g01820 161 CDD RING-H2_PA-TM-RING 108 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01820 Gma-Chr20 45584536 45585021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01820 18 154 C3H Transcription Factor Family AT5G06490 34.839 1.81e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01820 - - gmx:102663718 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01892 10 46111976 46112688 Gma20g01820 20 45584536 45585021 GST