Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01805 atGGAAGCACCAGAAGAACTCTCTTTGGGGGGCTCAAAAGATCACACCAACATTGTCAAAGGAAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATGCCATTCTCCATCACCTCCAATTCTTCCACCGGAGAAGGAGAAAAAGAAGAAGGTTGCAACAACGGTGATGATGACAACAACAACATGAAAAATGAAGATATCAATAACATCAACAGCTCTCCCACCTCTTCTGCAGGATTACAAGACAGCACAGATGAAGAGGAGGACATGGCGAATTGCCTCATCCTTCTAGCTCAAGGGCAATCACGGGAATCCCCGAAACACGCGGAGGAGGACGCCGGCATGAACTCCGCCAAGTACAGCAGTAGAAAATTCTTGGAAGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTCTATGAATGCAAGACATGTAACAGAACCTACCCTTCATTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCATTGATGGCTATTGGCCTAGAGAAGAAACAGCAACACCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAAGTCACCATTTTCCCTTCAATTGAATACAAAGGGGAATTTGTACAGCAACAACAACAAGTCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCAGGACAGGCATTGGGTGGTCACATGAGACGCCACCGCGCTCCGGTCGGAACCACCACCCCCGCCACACTCTCCTTCACCCCTTTGGCTTTGGAACCAGAAGAAGATCACCCCAGAAAGAAAAGGAATGTGTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCAGAAGATGATCATAGAGAATCCAAGTTTGCCTTCACATCCAAGCAacaacaacatcaacaaccacaacaacagcaacagccacaaACAAGTCTTGTCTTCCCCGCACCAGCTTTGGTGGATTGCCATTACTAA 984 0.4573 MEAPEELSLGGSKDHTNIVKGKRTKRVRPQSPMPFSITSNSSTGEGEKEEGCNNGDDDNNNMKNEDINNINSSPTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHAEEDAGMNSAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTYPSFQALGGHRASHKKPKALMAIGLEKKQQHLLSSDEEEFQLKTNKSPFSLQLNTKGNLYSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTTTPATLSFTPLALEPEEDHPRKKRNVLNLDLDLNLPAPEDDHRESKFAFTSKQQQHQQPQQQQQPQTSLVFPAPALVDCHY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01805 327 SMART c2h2final6 218 240 IPR013087 -
Gma20g01805 327 SMART c2h2final6 141 163 IPR013087 -
Gma20g01805 327 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Gma20g01805 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Gma20g01805 327 PANTHER ZINC FINGER PROTEIN ZAT5 12 327 - -
Gma20g01805 327 MobiDBLite consensus disorder prediction 49 63 - -
Gma20g01805 327 SUPERFAMILY beta-beta-alpha zinc fingers 140 240 IPR036236 -
Gma20g01805 327 MobiDBLite consensus disorder prediction 288 315 - -
Gma20g01805 327 Pfam C2H2-type zinc finger 217 243 - -
Gma20g01805 327 Pfam C2H2-type zinc finger 140 166 - -
Gma20g01805 327 MobiDBLite consensus disorder prediction 1 88 - -
Gma20g01805 327 MobiDBLite consensus disorder prediction 296 315 - -
Gma20g01805 327 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Gma20g01805 327 Gene3D Classic Zinc Finger 139 240 - -
Gma20g01805 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 240 IPR013087 -
Gma20g01805 327 MobiDBLite consensus disorder prediction 64 81 - -
Gma20g01805 327 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 327 - -
Gma20g01805 327 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01805 Gma-Chr20 45444901 45446317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01805 1 327 C2H2 Transcription Factor Family AT5G04390 44.565 2.91e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g01805 zf-C2H2_6 6.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01805 - - gmx:100799383 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00543 10 5590845 5592009 Gma20g01805 20 45444901 45446317 GST