Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01790 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCTGAGCCTGCTGATGCCCATGCTGAGTTTGAGCTTGGACTGGAGGAGTTTATGCGTGGGCACTTGGACGATTGTATGTCGTTTGCTTCGTGTAGCTCGTCTCGTGCTCCGGATGATGAGGATGACGAGGGTGATCAGCTGGTTCGGAGGAGAAGGAGGTCTGACCTTGAAGGGGATGATTTGGCTGAGTCGTCGGCTGCACGCCGGCGGCATTCGAGGATTTTGAGCAGGTGGGCTGCACGGCAGGCACAGGAGATGATAACTACTATAGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGGTTGCATACCGTGTCAATGCTGGATTCTTCTTTTCTGAGAGGTTCGCAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGACCGAGCACTCAGGCGTCTGCCATTCTGCAGATGTGGCGTGAGTTGGAAGATGAGCATTTGTTGAACCGGGCGCGGGAAAGGATGAGGGTAAGGTTGCGGCACCAGAGAAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAACCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAACTGATTATGGTACTTGGTCACATGATCAGATTGGATCAAGGAATGCACATGGGGATCATAATGGGTCTAGCAGGGAACAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCAGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGGAGAGCAGAATGGCTTGGAGAAACGGAGCGTGAGAGGGTAAGAAATATCAGGGAATGGGTGCAAATGATTAGCCAGCAGAGAAGTTCGCGTGGGAGCCGGAGGGATGCTCAAGTAAGTGAGGGTGCTCAATCTGATCGAGCCCGCGATGTAGTAGCTGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTTAAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCACCGTCTATGGCTGCAAGTGAATTAGTTCAGCTAAGACAACGGCACACGGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAGTCCTGATTCCACATCAAATAGTAACGCGAGTGAAACAAGAGGTGATGGGAGCCAAGCAAACAGTCTGGTAGATGGCCAACAAGAAAACTATGAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAAGGGGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCAACGGAGTCCATTTGATCAGACGAGAGATGGAAGGGCAGTCAGTGATTGGCCACAGGAACCTCCCAGAAACTTAACTGGGGAAGATCCTCATCCCCAGGAAGCTCAAAGAATTTGGCATGATGATAACACAAGGGAAACTGTTGGTAATTGGTCCGAAGGACCTTCTGGAGCTTCGAGGAATCGCCGTGGGGTTCCCATAAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCAATTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCTGCCTCTCCTGAACGGGACCCAGACCAGCAGGGTGAGGAACGTGATGAGGGTCAACATGAAACCATTAACAGGCCTTCACTGGTGTTGCCTTCTCCACCAGTACCTCCGCCACAACCTCTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTTAGACAGGAAGTATCTGCTGCTCTGAACCGCTCAGGTAGTGAAAATGGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAATGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2547 0.4865 MTDFQPLQQKPEPADAHAEFELGLEEFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRHQRNSDSNTNVSSTMSDSRGSENQGSLGDASESETDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVQGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRNIREWVQMISQQRSSRGSRRDAQVSEGAQSDRARDVVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTSPDSTSNSNASETRGDGSQANSLVDGQQENYEQQIRSLETDVRQLPNRTGTLESSTSESISWQEASNQGGNWQEQIAEEGGGNWQRSPFDQTRDGRAVSDWPQEPPRNLTGEDPHPQEAQRIWHDDNTRETVGNWSEGPSGASRNRRGVPIRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQGEERDEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSGSENGLSAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01790 848 MobiDBLite consensus disorder prediction 173 273 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 257 273 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 222 251 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 649 696 - -
Gma20g01790 848 SUPERFAMILY RING/U-box 795 841 - -
Gma20g01790 848 Coils Coil 725 745 - -
Gma20g01790 848 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 848 - -
Gma20g01790 848 Coils Coil 468 488 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 434 532 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 313 333 - -
Gma20g01790 848 CDD mRING-HC-C3HC5_NEU1 795 835 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 557 571 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 666 681 - -
Gma20g01790 848 Pfam Zinc finger, C3HC4 type (RING finger) 793 840 - -
Gma20g01790 848 ProSiteProfiles Zinc finger RING-type profile. 796 835 IPR001841 -
Gma20g01790 848 MobiDBLite consensus disorder prediction 43 77 - -
Gma20g01790 848 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 848 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 301 333 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 52 77 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 124 147 - -
Gma20g01790 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 775 846 IPR013083 -
Gma20g01790 848 MobiDBLite consensus disorder prediction 179 221 - -
Gma20g01790 848 MobiDBLite consensus disorder prediction 430 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01790 Gma-Chr20 45275172 45280847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01790 755 842 C3H Transcription Factor Family AT3G06140 33.708 1.49e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01790 - - gmx:100805607 1644.02